Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1239 ATGTCGATGGAGAATGATATGTTTGGTGCTCCAATGGACATGGCTGGCCGTAGCGGCACTGTCATAGATGAAATTCCACAAACACCTAATCCAGTCTTTCAGGGCTATTCATTTTACCATAATGACCAAACCCGAATCATGAATGGAATTTCAATGCTTGCTGGAGTCCAAGGTGAACTCATAAGTATTGTCCATTCGGATGCTCCTATAATGAATCCTGCCTGCATTGCTCATCCTAATTCCTTTGTTCCATCGCAAGGAAAGAACATTGTAGGAGATACCCCACTTGGAAACCCATCTCCCCGAAACAACAGTCAGTTTCAAGATCATTCAGCTGGAGCCACTATCTCTCCTGCTTCACTTGCTGCCATTCTTGCTGCAAGATTTGGACTTCAAGAAAACTTAGAGAAATCAGCGGCTTTGTCTCCTTCAGTCTTTTCATTGGAGGCACTGGCACCATATATGTTAAACAGTTGGCAGGATAATTCAAATACTTCGCTTCCAACTTTTGGAGATCGTCGGTATGATGAAGTACCTGGTACCAGGTTCCAGACTTATTCGTCCGCAGCAAGCCTGGATCCAAATGGATGGACGTCATCAAATGTTGCAAACTTGGCCTGTCATGCTTATGAATTCCCTAATTTCAGGAATGAGCTTTCATTGAGTCTAGCATCATCTCCTCCCCCTGGTCAGCGGTCGGAGGTGAGTTCTGATAGCTTCGAACTAGCCTCCTGTAGCGATGGGGGGGTTTCTAGGAGTTTATGTTCCAATAGACGTGTGAATTTTTCACAAGCAATATTGGGGTCCAGATATCTTAGTGGGATTCAAGAAATACTTGCTCAAATTGCAAGGTATTCACTTGAAAATGTAGAGCAGACAAATTGTTCAGCTGCTTGTAGTAGAGCCAGAGCAGGAGGGAATGCGTCAAGCTCAGCTCCTCCATCCAGGAGAATGACAGCGACAAATAATCCCCATGCAGATTCTATGTTTGAAGCTCAAGTGAATTCTTCATTGGCAAGGCACGATGCTGCTGAATCAAAGAAATCCCAGCTTCTGACACTTCTACAACTGGTGGACAGTCGGTATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCTCAAGTTCATGCTCGTTTTGCCCTTCAAACAATCTCTACGTTGTACAAGGATATGCGTGACAGGATAAGCAATTATATTCTTGCTATGGGAGAAAAATTTAACAACTTACACTCTGAAGAAGAGAAGGAAAGGTCTACAGAAGCTTTGTTCATCGAAAAGCATTGGGCTCTGCAGCAATTGAAAAGAAAAGAGCATCAGTTATGGAGACCCCAAAGGGGCTTGCCTGAACGATCTGTCTCAGTTCTACGGGCTTGGATGTTTCAGAACTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCAATTACTTGCAGTGAAAAGTGGATTGACTAGAAGTCAGGTATCCAATTGGTTCATTAATGCTCGTGTAAGGCTATGGAAACCCTTGATCGAGGAAATGTACACTGAAATGAACAAAAGAAAGACTCTTCGAAGTGAAGAAGGCGCGCAGAACAGCCATAGAAGCAGCAGGATAAGCTTGAGCAATCAAAGATTTACTATCAATTGA 1659 0.4346 MSMENDMFGAPMDMAGRSGTVIDEIPQTPNPVFQGYSFYHNDQTRIMNGISMLAGVQGELISIVHSDAPIMNPACIAHPNSFVPSQGKNIVGDTPLGNPSPRNNSQFQDHSAGATISPASLAAILAARFGLQENLEKSAALSPSVFSLEALAPYMLNSWQDNSNTSLPTFGDRRYDEVPGTRFQTYSSAASLDPNGWTSSNVANLACHAYEFPNFRNELSLSLASSPPPGQRSEVSSDSFELASCSDGGVSRSLCSNRRVNFSQAILGSRYLSGIQEILAQIARYSLENVEQTNCSAACSRARAGGNASSSAPPSRRMTATNNPHADSMFEAQVNSSLARHDAAESKKSQLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHARFALQTISTLYKDMRDRISNYILAMGEKFNNLHSEEEKERSTEALFIEKHWALQQLKRKEHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMYTEMNKRKTLRSEEGAQNSHRSSRISLSNQRFTIN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1239 552 Pfam Associated with HOX 266 407 IPR006563 -
Prci2g1239 552 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 190 533 - -
Prci2g1239 552 MobiDBLite consensus disorder prediction 525 552 - -
Prci2g1239 552 MobiDBLite consensus disorder prediction 88 111 - -
Prci2g1239 552 SMART HOX_1 452 516 IPR001356 GO:0003677
Prci2g1239 552 MobiDBLite consensus disorder prediction 536 552 - -
Prci2g1239 552 Gene3D - 455 534 - -
Prci2g1239 552 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Prci2g1239 552 SMART prehox3 260 408 IPR006563 -
Prci2g1239 552 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Prci2g1239 552 SUPERFAMILY Homeodomain-like 454 521 IPR009057 -
Prci2g1239 552 CDD homeodomain 452 512 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1239 Prci-Chr2 9202226 9205983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1239 217 525 Homeobox Transcription Factor Family AT4G32980 56.508 7.19e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci2g1239 POX 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1239 - - gmx:100820354 558.91