Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1213 ATGATGAAAGCTTTGGCGGTGGATGAGAATATGTCCAATTTGACAACTGCATCTAGTGAAATAATAAGCGCTTCTTCTGGGACTAGAAATGATACTCCTGTCTCTCTCTATCCTCAGCAGTACTCCTCCACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCGGGCAATCCAGACCCAGAAGCTGAAGTAATAGCCTTGTCTCCCAAGACCCTCTTGGCGACAAACCGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAATCTTCAGCTTCACAGGAGAGGGCACAACTTGCCATGGAAGCTCAAACAAAGAAACAACAATGAAGTTATTAAAAAGAAGGTGTATGTGTGCCCGGAGGTAACATGTGTTCACCATGACCCCTCAAGGGCCCTCGGAGACCTCACTGGCATCAAAAAGCATTTCTGCAGAAAGCACGGCGAGAAAAAATGGAAGTGTGAGAAATGCTCCAAGCGTTACGCTGTTCAGTCTGACTGGAAGGCTCACTCTAAAATTTGCGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCTAGAAGGGACAGTTTCATCACACACAGAGCCTTCTGCGATGCTTTAGCACAGGAGAGTGCAAGAGCAATCACAGCAGTGAACCCTCTTCTTCACAGCCATCCCCTCCAAGCTCCACCACCGCCACTACTTGCAAAAAAAGAGCAAGATTTTCCACCATGGTTGGGAGAAGCTGGAACCGGAAACACCCTCAGACCTTTCTCCTCCTCACATTTGGATCAGTCCTTGAATTTAATCCATCACCATCAAAACCCTAACCCCACACCGTCCCTTCCTCGTTTCCAATCCCCACCCTCTCCTTATATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATTGGTCACATGCCTCAATCTGATCATCAATGTACCACCATGCCTAATTCATCCTCATCTTTAGCTGTTGCTGTTTTGGGTATGCCTTCACGTGACCAGATGGGGTTGCCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCTGGGTTCGCCTCTGATTACTTAGAAGATGATGCTACTGCTGTAAATTGCAACACAGAAGCTCCACCTACTGCTTCTCTTTTCCATGACATGATGGCTAACGCTGCTTCTACTGTGTCCGTGCCTTCTTCTGCTAGTGCCTTTGAGAGGTCTTCCTTCGAGGATGCTTTGAGAGGAATGTTGAATCCAACATCAAGAGACACTGCTAGTGATGAAATGACCCGAGATTTTCTGGGTCTCAAGGCATTTTCTCAAAAGGATTTTTTCAACATATCGGGGCTTGACCATTTGGCTTCTTCGTCGTATGGTAAGCAAAGTCGCAACCAAACACCTTGGCAAGGATAA 1407 0.462 MMKALAVDENMSNLTTASSEIISASSGTRNDTPVSLYPQQYSSTSTNQEPQPKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNNEVIKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESARAITAVNPLLHSHPLQAPPPPLLAKKEQDFPPWLGEAGTGNTLRPFSSSHLDQSLNLIHHHQNPNPTPSLPRFQSPPSPYMSATALLQKASQIGHMPQSDHQCTTMPNSSSSLAVAVLGMPSRDQMGLPHALASYGNKAAGFASDYLEDDATAVNCNTEAPPTASLFHDMMANAASTVSVPSSASAFERSSFEDALRGMLNPTSRDTASDEMTRDFLGLKAFSQKDFFNISGLDHLASSSYGKQSRNQTPWQG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1213 468 Gene3D Classic Zinc Finger 61 131 - -
Prci2g1213 468 MobiDBLite consensus disorder prediction 23 54 - -
Prci2g1213 468 FunFam protein indeterminate-domain 12-like 61 130 - -
Prci2g1213 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Prci2g1213 468 MobiDBLite consensus disorder prediction 23 65 - -
Prci2g1213 468 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Prci2g1213 468 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Prci2g1213 468 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Prci2g1213 468 SMART c2h2final6 82 104 IPR013087 -
Prci2g1213 468 SMART c2h2final6 159 179 IPR013087 -
Prci2g1213 468 SMART c2h2final6 124 154 IPR013087 -
Prci2g1213 468 Gene3D Classic Zinc Finger 137 217 - -
Prci2g1213 468 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
Prci2g1213 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 441 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1213 Prci-Chr2 9050616 9053298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1213 7 309 IDZ Gene Family AT1G55110 56.305 1.04e-121 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci2g1213 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1213 K25870 - vvi:100257789 509.22