LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g1213	ATGATGAAAGCTTTGGCGGTGGATGAGAATATGTCCAATTTGACAACTGCATCTAGTGAAATAATAAGCGCTTCTTCTGGGACTAGAAATGATACTCCTGTCTCTCTCTATCCTCAGCAGTACTCCTCCACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCGGGCAATCCAGACCCAGAAGCTGAAGTAATAGCCTTGTCTCCCAAGACCCTCTTGGCGACAAACCGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAATCTTCAGCTTCACAGGAGAGGGCACAACTTGCCATGGAAGCTCAAACAAAGAAACAACAATGAAGTTATTAAAAAGAAGGTGTATGTGTGCCCGGAGGTAACATGTGTTCACCATGACCCCTCAAGGGCCCTCGGAGACCTCACTGGCATCAAAAAGCATTTCTGCAGAAAGCACGGCGAGAAAAAATGGAAGTGTGAGAAATGCTCCAAGCGTTACGCTGTTCAGTCTGACTGGAAGGCTCACTCTAAAATTTGCGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCTAGAAGGGACAGTTTCATCACACACAGAGCCTTCTGCGATGCTTTAGCACAGGAGAGTGCAAGAGCAATCACAGCAGTGAACCCTCTTCTTCACAGCCATCCCCTCCAAGCTCCACCACCGCCACTACTTGCAAAAAAAGAGCAAGATTTTCCACCATGGTTGGGAGAAGCTGGAACCGGAAACACCCTCAGACCTTTCTCCTCCTCACATTTGGATCAGTCCTTGAATTTAATCCATCACCATCAAAACCCTAACCCCACACCGTCCCTTCCTCGTTTCCAATCCCCACCCTCTCCTTATATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATTGGTCACATGCCTCAATCTGATCATCAATGTACCACCATGCCTAATTCATCCTCATCTTTAGCTGTTGCTGTTTTGGGTATGCCTTCACGTGACCAGATGGGGTTGCCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCTGGGTTCGCCTCTGATTACTTAGAAGATGATGCTACTGCTGTAAATTGCAACACAGAAGCTCCACCTACTGCTTCTCTTTTCCATGACATGATGGCTAACGCTGCTTCTACTGTGTCCGTGCCTTCTTCTGCTAGTGCCTTTGAGAGGTCTTCCTTCGAGGATGCTTTGAGAGGAATGTTGAATCCAACATCAAGAGACACTGCTAGTGATGAAATGACCCGAGATTTTCTGGGTCTCAAGGCATTTTCTCAAAAGGATTTTTTCAACATATCGGGGCTTGACCATTTGGCTTCTTCGTCGTATGGTAAGCAAAGTCGCAACCAAACACCTTGGCAAGGATAA	1407	0.462	MMKALAVDENMSNLTTASSEIISASSGTRNDTPVSLYPQQYSSTSTNQEPQPKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNNEVIKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESARAITAVNPLLHSHPLQAPPPPLLAKKEQDFPPWLGEAGTGNTLRPFSSSHLDQSLNLIHHHQNPNPTPSLPRFQSPPSPYMSATALLQKASQIGHMPQSDHQCTTMPNSSSSLAVAVLGMPSRDQMGLPHALASYGNKAAGFASDYLEDDATAVNCNTEAPPTASLFHDMMANAASTVSVPSSASAFERSSFEDALRGMLNPTSRDTASDEMTRDFLGLKAFSQKDFFNISGLDHLASSSYGKQSRNQTPWQG	468

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci2g1213	468	Gene3D	Classic Zinc Finger	61	131	-	-
Prci2g1213	468	MobiDBLite	consensus disorder prediction	23	54	-	-
Prci2g1213	468	FunFam	protein indeterminate-domain 12-like	61	130	-	-
Prci2g1213	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	82	104	IPR013087	-
Prci2g1213	468	MobiDBLite	consensus disorder prediction	23	65	-	-
Prci2g1213	468	Pfam	Zinc-finger double-stranded RNA-binding	82	104	IPR022755	-
Prci2g1213	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	84	104	IPR013087	-
Prci2g1213	468	FunFam	protein indeterminate-domain 5, chloroplastic-like	137	216	-	-
Prci2g1213	468	SMART	c2h2final6	82	104	IPR013087	-
Prci2g1213	468	SMART	c2h2final6	159	179	IPR013087	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g1213	Prci-Chr2	9050616	9053298	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g1213	7	309	IDZ Gene Family	AT1G55110	56.305	1.04e-121	361

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Prci2g1213		zf-C2H2_jaz	6.7e-05	CL0361

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g1213	K25870		-	vvi:100257789	509.22

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