Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1176 ATGGACGGAGGTGCTCCCTACAATCCTCGCACCGTCGAAGAGGTCTTTCGGGATTTCAAGGGCCGCCGTGCTGGCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTTTATCAGCAGTGCGATCCTGAGAAGGAGAATCTGTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCCGAGGAGGTGCCTCCAGAGCTTCCGGAACCTGCACTGGGTATTAACTTTGCCAGAGATGGGATGCAGGAAAAAGATTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTTGCTGTAGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCCGTTTCTAACCATAGCAGTAACAAATCCAAATCAATCTCTAAGCAAACGCAGAGAGGATCTGAATCCCAAGCGAAGTATTCGAAAGCAACGCAATCAAAGGATGAAGATGAGGAGGGTCTGGAAGAAGAAGATGAGGAGGAGCATGGGGAGACACTATGTGGGGCATGTGGAGAGAACTATGCAGCTGATGAATTCTGGATTTGCTGTGATATCTGTGAGAAGTGGTTTCACGGGAAGTGCGTGAAGATTACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCGTCCTGTAGCAACAAGAGAGCTCGACCTTGA 771 0.4695 MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSISKQTQRGSESQAKYSKATQSKDEDEEGLEEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1176 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Prci2g1176 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Prci2g1176 256 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Prci2g1176 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Prci2g1176 256 PANTHER CPG BINDING PROTEIN 8 255 IPR045104 GO:0006355|GO:0042393
Prci2g1176 256 MobiDBLite consensus disorder prediction 150 177 - -
Prci2g1176 256 MobiDBLite consensus disorder prediction 145 196 - -
Prci2g1176 256 FunFam PHD finger alfin-like protein 195 251 - -
Prci2g1176 256 CDD PHD_AL_plant 202 252 IPR044104 -
Prci2g1176 256 Pfam PHD-finger 203 252 IPR019787 -
Prci2g1176 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Prci2g1176 256 SMART PHD_3 202 250 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1176 Prci-Chr2 8791119 8794954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1176 1 255 Alfin-like Transcription Factor Family AT3G42790 74.708 1.32e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci2g1176 Alfin 5.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1176 K26274 - mnt:21387296 459.529