Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1174 ATGGACGGAGGTGCTCCCTACAATCCTCGCACCGTCGAAGAGGTCTTTCGGGATTTCAAGGGCCGCCGTGCTGGCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTTTATCAGCAGTGCGATCCTGAGAAGGAGAATCTGTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCCGAGGAGGTGCCTCCAGAGCTTCCGGAACCTGCACTGGGTATTAACTTTGCCAGAGATGGGATGCAGGAAAAAGATTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTTGCTGTAGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCCGTTTCTAACCATAGCAGTAACAAATCCAAATCAATCTCTAAGTTTGGCATGACACTTGAGCGCCTGACTGTTAGTTATTGTCATTGTTTGGGTAAGCAAACGCAGAGAGGATCTGAATCCCAAGCGAAGTATTCGAAAGCAACGCAATCAAAGGATGAAGATGAGGAGGGTCTGGAAGAAGAAGATGAGGAGGAGCATGGGGAGACACTATGTGGGGCATGTGGAGAGAACTATGCAGCTGATGAATTCTGGATTTGCTGTGATATCTGTGAGAAGTGGTTTCACGGGAAGTGCGTGAAGATTACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCGTCCTGTAGCAACAAGAGAGCTCGACCTTGA 825 0.4667 MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSISKFGMTLERLTVSYCHCLGKQTQRGSESQAKYSKATQSKDEDEEGLEEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1174 274 SUPERFAMILY FYVE/PHD zinc finger 210 271 IPR011011 -
Prci2g1174 274 MobiDBLite consensus disorder prediction 188 214 - -
Prci2g1174 274 FunFam PHD finger alfin-like protein 213 269 - -
Prci2g1174 274 Pfam PHD-finger 221 270 IPR019787 -
Prci2g1174 274 CDD PHD_AL_plant 220 270 IPR044104 -
Prci2g1174 274 ProSitePatterns Zinc finger PHD-type signature. 221 267 IPR019786 -
Prci2g1174 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 269 IPR013083 -
Prci2g1174 274 PANTHER CPG BINDING PROTEIN 8 273 IPR045104 GO:0006355|GO:0042393
Prci2g1174 274 SMART PHD_3 220 268 IPR001965 -
Prci2g1174 274 ProSiteProfiles Zinc finger PHD-type profile. 218 270 IPR019787 -
Prci2g1174 274 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1174 Prci-Chr2 8791115 8794954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1174 1 273 Alfin-like Transcription Factor Family AT3G42790 70.073 1.35e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci2g1174 Alfin 6e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1174 K26274 - mnt:21387296 454.136