Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1171 ATGGATGCTAAGCATCGACCTTTGAAAGGCCGCGAAGTAAGCATGACGGAGAAGAAAACAGCCAACGAAGGAGAAGTGGTGGTGACTATTTCGGGTCAGCAGAACACAAATCTCACTGGAGAGGGTCCAAGCTCCAAAGCGACTGAATCTAACAATACGTCCACCGAGTACGCTAATGGATATGCGTCCTCAAAGTCGCCAGCTTTAAATCGTGCTTCCCCTGAGATAAGGTCTAATTCCAGCCCAAACAAGTCTCCAGAACTTTCTGCTCCGACCCGAAACCTTATTCGCAGAAAGTGTCTAGCAAGGTCAGTGTGTTCTAAGCCTAAATCTAGATTTGGGGAACAACCTTATCCTGCTGATGCAGCAGTTTTAGAAGAGAATGACAGTTCCACTCTGCGAGAACAGCTTGCCATTTGTTCGCCCTATAGGCAATCGGTCAATGAAGCATCACCTAATAACAAATCCACTACTGTTAACAGGACAGTGTCCATTGCTTCCGTCACTCCTAAGACGCCATTGATGGCGTCTCCGGGGATAGCTGGGGAAGATGAGGATGAAATTGTTTACAAGAAAGTTGAACTGAGTAAAGGGAAGCGTAAGGCGGTGAAGGTTAAGGATTTGATTGAGTGTATTGTGTTTGCATGCATTACTGGATTCTTGGTGGCTAGCCTGACTGTCGAAAAATTGAAAACCGTAATGATTTGGGGCCTGGGGCTTTGGAAGTGGTGTGTACTTCTGATGGTTATCTTTTGTGGCATGCGGGTTACCAAATGGTTCATGCACGTTACAATTTTCTTGATTGAAATGAACTTTTTGCTGAGGAAAAAGGTTCTCTATTTTGTTCATGGACTAAAGAAAAGTGTCCAAGTCTTCATTTGGCTGGGATTGGTTCTTCTCGCTTGGGTTCTGTTAATCCATCGCGGGGTCCAGCGATCAGAACTTGGCACACAAATTTTGAATGGTGTGACATGGACTCTTGTTTCTCTTCTCATTGGGGCATTCTTATGGGTAGCGAAGACGTCGCTGCTGAAGGTATTAGCCTCAAATTTCCATGTCAAATCTTTCTTTGATAGAATTCAAGAGTCAATCTTCCATCAGTACGTTTTGCAAAGTCTATCTGGGCCTCCATTAATAGAGGAGGCTGAGAAGGTTGGTAGATCACCGAGTATTGGTCAGGTTAGTTTCAGGAGTACAAAAGGTAAAAAAGGCACCAAGAAAGAGGTTATTAATATGGCAACGTTTCACAAGATGAAACGGGAGAAAGTTTCTGCTTGGACAATGAAGATTTTGGTTGATGCAGTGACAAATTCAAGACTGTCCACAGTCTCAAATGTTATAGATGAGAGCTTTGATGATGGAGGACTAGAACAAACCGACAAAGAAATTACAAATGAGATGGAAGCAACTGCTGCTGCATATAAGATTTTCAAGAATGTCTCTGCCCCTGGTTGCTCGTACATTGATGAGGATGACCTTTTGAGGTTCATGATTAAGGAAGAAGTAGATCTGGTCTTTCCCCTACTTGAAGGTTCAGAGACTGGACGGATAGAAAGAAAGGCTTTGACAAAATGGGTGGTTAAGGTCTATCAAGAACGCAAGGCATTGGCACATGCCTTGAGTGACACCAAGACTGCTGTAAAGCAATTGAACAAGCTTGTAACAGGGATCCTGGTTATTTTGATTGTAATTGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTAGTGTTCATTTCATCTCAGCTAGTAGTTGCGACCTTCATGTTTGGAAACACATGCAAAAATATATTTGAGGCTCTCATATTTGTGTTCGTAATGCATCCATTTGATGTTGGTGACCGATGTGTTGTAGATGGGGTCCAGCTATTGGTTGAAGAAATGAACATCTTGACAACGGTATTCTTGAAACTTGATAACGAGAAGGTGTTCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACAGAAGCCCGGATATGGGTGACAATATAGAGTTTTCAATTGACTTTATGACACCATTGGAGAGGATTGGGGCACTGAAGGAAAAAATAAAAAGGTACTTGGAGGGCAATCCGCATCACTGGCATCCTAATCACAATGTAATAGTGAAGGAGATAGAAAATGTGAATAAGATCAAAATAGCTCTGTATGTTAACCACACGATGAATTTTCAAGACTTCGCGGAGAAGAACAGGAGGAGAACGGAGCTAGTGATGGAACTAAAGAAAATATTTGAGCAGCTTGATATTAGATACAATCTTCTTCCTCAGGCAGTTCAACTCAGCCATGTTGGGTCAGATACAGCCCCACTCAAGTGA 2337 0.4253 MDAKHRPLKGREVSMTEKKTANEGEVVVTISGQQNTNLTGEGPSSKATESNNTSTEYANGYASSKSPALNRASPEIRSNSSPNKSPELSAPTRNLIRRKCLARSVCSKPKSRFGEQPYPADAAVLEENDSSTLREQLAICSPYRQSVNEASPNNKSTTVNRTVSIASVTPKTPLMASPGIAGEDEDEIVYKKVELSKGKRKAVKVKDLIECIVFACITGFLVASLTVEKLKTVMIWGLGLWKWCVLLMVIFCGMRVTKWFMHVTIFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLAWVLLIHRGVQRSELGTQILNGVTWTLVSLLIGAFLWVAKTSLLKVLASNFHVKSFFDRIQESIFHQYVLQSLSGPPLIEEAEKVGRSPSIGQVSFRSTKGKKGTKKEVINMATFHKMKREKVSAWTMKILVDAVTNSRLSTVSNVIDESFDDGGLEQTDKEITNEMEATAAAYKIFKNVSAPGCSYIDEDDLLRFMIKEEVDLVFPLLEGSETGRIERKALTKWVVKVYQERKALAHALSDTKTAVKQLNKLVTGILVILIVIVWLLLMEIATTKVLVFISSQLVVATFMFGNTCKNIFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLDNEKVFYPNSVLATKPISNYYRSPDMGDNIEFSIDFMTPLERIGALKEKIKRYLEGNPHHWHPNHNVIVKEIENVNKIKIALYVNHTMNFQDFAEKNRRRTELVMELKKIFEQLDIRYNLLPQAVQLSHVGSDTAPLK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1171 778 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 769 IPR016688 -
Prci2g1171 778 Gene3D - 611 660 IPR023408 -
Prci2g1171 778 Pfam Mechanosensitive ion channel 552 757 IPR006685 GO:0016020|GO:0055085
Prci2g1171 778 SUPERFAMILY Sm-like ribonucleoproteins 601 660 IPR010920 -
Prci2g1171 778 MobiDBLite consensus disorder prediction 26 90 - -
Prci2g1171 778 MobiDBLite consensus disorder prediction 1 94 - -
Prci2g1171 778 PIRSF Memb_At2g17000 11 776 IPR016688 -
Prci2g1171 778 MobiDBLite consensus disorder prediction 1 19 - -
Prci2g1171 778 FunFam Predicted mechanosensitive ion channel 611 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1171 Prci-Chr2 8752504 8758124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1171 15 768 Mechanosensitive Ion Channel Family AT5G12080 58.213 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1171 K22048 - qsa:O6P43_019135 1105.12