Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1168 ATGATCAGTATGCCTCTTTCGTCTATGAAGCTTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCGGTTACCTATCAAAACAAAATTATTGGGACAGATGCTTTACTATGTGATGACAACAGGTTCAGGACAACAGACGCTCGGAGAGGAATACTGTGACATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCCCTTTTTATTGTATACCAGACAGCTGTTCCATATATTGCCGAACGAATTAGTTCTAGAATTGCATCCCGAGGAATTGTCCTTGCTGATTCACAATCTGTGGAGACCTATAGCGAAAATGCTACCATTAGGAGTAGTGAATTTCAAACTTCTGATGTGAGTGAACTTCCCTCTTCCACGTCAGGGCAATCTCCTGCAACTCTGACAAGGTTGAAGGAGAAGCTGAGAGGATTTTGGTTGCATGTAGTTCGGAGATGGCCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAGCTGGTTCTGCGGGCTAATCTTATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATCAAATCAAAGGCCCAGATACCAAATTCTGGGTGTATTTCTATTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTTCGTCGAAGCCATTTATCTTCAATTGCAAGTTCAGTTCATCAGACATCCTTTGGGACGCCCCAGAGATTTGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCAGCATCATCAGATACAGACAAAGGAAATTGGTTATCCGACACTACAAATTCTGAGTCCCAAGCAATTAGTGGAGTGAGCAAATGCACGCTCTGCCTGAGTAATCGGCAACACCCAACAGCCACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACGCACTCAAGTCTAGTGTGCTTGTATCATTCAGACTTCTAG 1053 0.4444 MISMPLSSMKLVAMPSVTSLVLELRLPIKTKLLGQMLYYVMTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIVLADSQSVETYSENATIRSSEFQTSDVSELPSSTSGQSPATLTRLKEKLRGFWLHVVRRWPTMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCIIAAEGLRRSHLSSIASSVHQTSFGTPQRFAGRGLPVLNEEGLPASSDTDKGNWLSDTTNSESQAISGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1168 350 CDD RING-HC_PEX10 294 345 - -
Prci2g1168 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Prci2g1168 350 ProSitePatterns Zinc finger RING-type signature. 311 320 IPR017907 -
Prci2g1168 350 ProSiteProfiles Zinc finger RING-type profile. 296 334 IPR001841 -
Prci2g1168 350 FunFam Peroxisome biogenesis factor 10 271 347 - -
Prci2g1168 350 Pfam Ring finger domain 295 334 IPR001841 -
Prci2g1168 350 Pfam Pex2 / Pex12 amino terminal region 30 233 IPR006845 -
Prci2g1168 350 SUPERFAMILY RING/U-box 295 339 - -
Prci2g1168 350 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 30 348 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Prci2g1168 350 SMART ring_2 296 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1168 Prci-Chr2 8724671 8728478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1168 280 346 C3H Transcription Factor Family AT4G28270 32.530 1.51e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1168 K13346 - gmx:100783914 529.25