Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1166 ATGGGGAAGATCAGTCCATGTGGCGCAGAGGAAGGAGAAGGCCTGAACAGAGGAGCGTGGACGGTTCAAGAGGACAAGTTACTCACTTCTTACATTGAGACCCACGGCCAAGCCAAATGGACACTCGTTCCTAAGAAAGCTGGCTTGAACAGAAGTGGAAAAAGTTGTAGGCTCAGATGGTTGAACTATCTCAGGCCTGATATTAAAAGAGGCGGTATCACCCAGGATGAAGAAGAACTCATTATCAGACTTCATAAACTTCTTGGTAACAGGTGGTCTCTCATAGCTGGAAGGCTACCTGGCCGAACGGACAATGAAATCAAGAACTACTGGAACACCACTCTGGCAAAGAAGTTAAGAGCACGGTCATGTTCAATGTCTGAACTAGATGGAACCATCATATCAACAGTAAATAATAAGCCTGGTGTCACTCAACCACGAGTAATCCGTACCAAGGCTAGTAGATGCAAGAACGTGATGATTCAATATCCCCGGAGTCCAAAGCAAAAATCGCCAGCTTCAAATGAGCCACAGATTTATGAATCTCACCAAACCACTGATCAGTTCTCAAACCAATGTCAGGGTTCTGATGCTTCAGAAGCTCAGCTTTCACAGGAATATCAGCTTCACGAAAATCACAGTTCATCAAATGTGAATTTATGGAGCCCTGGAATAAGAAATGAGTTTCTAGATCAACTAAATGAAGCAGAATTTTGCCCACGCTTTAACCTTGACGAACTTTTGGTCAGTTGGACCAGTAGTGGAAAACTCGAGGACAACATCGCTATGGATCTAGATATATCCCTCATAGATGGACCTGACTTTGTTTAG 831 0.4392 MGKISPCGAEEGEGLNRGAWTVQEDKLLTSYIETHGQAKWTLVPKKAGLNRSGKSCRLRWLNYLRPDIKRGGITQDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRARSCSMSELDGTIISTVNNKPGVTQPRVIRTKASRCKNVMIQYPRSPKQKSPASNEPQIYESHQTTDQFSNQCQGSDASEAQLSQEYQLHENHSSSNVNLWSPGIRNEFLDQLNEAEFCPRFNLDELLVSWTSSGKLEDNIAMDLDISLIDGPDFV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1166 276 CDD SANT 74 115 IPR001005 -
Prci2g1166 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 206 - -
Prci2g1166 276 SMART sant 16 66 IPR001005 -
Prci2g1166 276 SMART sant 69 117 IPR001005 -
Prci2g1166 276 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Prci2g1166 276 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Prci2g1166 276 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Prci2g1166 276 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Prci2g1166 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Prci2g1166 276 CDD SANT 19 64 IPR001005 -
Prci2g1166 276 Gene3D - 74 132 - -
Prci2g1166 276 FunFam MYB-related transcription factor 16 69 - -
Prci2g1166 276 Gene3D - 17 69 - -
Prci2g1166 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Prci2g1166 276 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1166 Prci-Chr2 8716286 8718053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1166 3 119 MYB Transcription Factor Family AT3G13540 67.521 2.77e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1166 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1166 K09422 - vvi:100264614 230.335