Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1164 ATGGGGAGAGGGTCATGTTGCTCCGAGAAAGGAGAAGTGCTGAAAAGAGGAGCATGGACTGTTCAAGAGGACAAGTTACTCACTTCTTACATCATGGCCCACGGCGAAGGCAAATGGACCCACGTCCCTAAAGCGGCTGGCTTGAACAGGAGTGGCAAAAGCTGTAGGCTCAGATGGTTGAACTATCTCAGGCCTGACATCAAGCGAGGAAACATCACTAGCGATGAAGAGGATCTCATCATCAGACTCCATAAACTTCTCGGCAACAGATGGTCTCTCATAGCTGGAAGGATACCCGGACGAACAGACAATGAAATAAAAAACTACTGGAACACAACTCTGTCAAAGAAGCTTAGAACACAATCATGTGAAATGACGACTGAGCAACATCCAGCGAGCAAATCAACAGCAAGGAAGCCCGACGATACCCCGTCACCAGTAATCCAAACAAAGCCTTGGAAATGCAAACACGTGGTTATCCGACATCCCCCATGTCCGAAGGAAAATTTGCTCGTTTCAAACCAGATGGAGTTTGAGGAAGCTGGCATAACCACCCAGTTCACTAATGAATCTCGAAACTCACCTGCTCCAGAGCCTCAATATGTCCATGAAAATCATCAGTTTAATGAAAATTATGATCTTTGCTCGGACATGAATCGTGATAGCAGTGTGGCCAGGCATGCTCATGATGATCAGTGCGGAGCTAGTGACCAAGTTATGTTCAATGGCTGGACCACAAGTGGCTTGGAGGTCGACTTCAATAGCATTGCCATGTGGGAGATAGATTCATTGGCCCTCCTCCTGGAATCTGAGGTTCTGGATGTGAGTCCAGTGAATTGA 840 0.4714 MGRGSCCSEKGEVLKRGAWTVQEDKLLTSYIMAHGEGKWTHVPKAAGLNRSGKSCRLRWLNYLRPDIKRGNITSDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNTTLSKKLRTQSCEMTTEQHPASKSTARKPDDTPSPVIQTKPWKCKHVVIRHPPCPKENLLVSNQMEFEEAGITTQFTNESRNSPAPEPQYVHENHQFNENYDLCSDMNRDSSVARHAHDDQCGASDQVMFNGWTTSGLEVDFNSIAMWEIDSLALLLESEVLDVSPVN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1164 279 Gene3D - 16 68 - -
Prci2g1164 279 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Prci2g1164 279 FunFam Transcription factor TT2 72 142 - -
Prci2g1164 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Prci2g1164 279 MobiDBLite consensus disorder prediction 125 148 - -
Prci2g1164 279 MobiDBLite consensus disorder prediction 125 143 - -
Prci2g1164 279 FunFam MYB-related transcription factor 15 68 - -
Prci2g1164 279 CDD SANT 73 114 IPR001005 -
Prci2g1164 279 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Prci2g1164 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci2g1164 279 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Prci2g1164 279 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Prci2g1164 279 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Prci2g1164 279 CDD SANT 18 63 IPR001005 -
Prci2g1164 279 SMART sant 68 116 IPR001005 -
Prci2g1164 279 SMART sant 15 65 IPR001005 -
Prci2g1164 279 Gene3D - 72 143 - -
Prci2g1164 279 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1164 Prci-Chr2 8695199 8696403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1164 6 145 MYB Transcription Factor Family AT3G13540 63.571 7.53e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1164 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1164 K09422 - qsu:112011853 234.958