Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1163 ATGGGGAGGAGTCCTTGTTGCTCCAAGGAAGGACTGAACAGAGGAGCCTGGACTGCCCTTGAGGACAAGCTACTGATCTCGTACGTCCAGGCCCATGGCGAAGGCAAATGGCGAAACCTCCCCCTCCGAGCCGGCTTGAGAAGATGTGGCAAAAGCTGCAGGCTTCGCTGGTTAAACTATCTCAGGCCTAACATTAAGCGAGGCAACATCACTCGCGACGAAGAAGATCTCATCGTCAGGCTCCATAAACTTCTTGGTAACAGGTGGTCTCTCATAGCCGGAAGACTTCCAGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACTACTCTGGCAAAGAAGCTCAGACCCTCGGAACCAAGTCCTCCCCGCAGATCAAGAGCAGGCAAGGAAGTAGTTCATGACCAGGCCTCTCCAGTTGATCCTCGGCCACAGTTAATTCAAACCAAGCCCAGTCGATGTAACAACGTAGTTATCCCAGTGCCGCAACATCCAAACAAAAACTCCAACATCAACTCTTCGGCTACAAACCAGAAAGAGGTTGAGGATGAAGCTCCCAAAGCCGTAAATCAATCTGACGAGGAGGGTTCTCGATCTCCAAAACCTCAAGTTATTAATGCAGACGAAGATGGGGTTCCAGCTGAAAATCATAATTCCGATGTAAATATGTGGAGTTCTGGAAGCGATGATCACTTTGCCCTGACTGCAGAAAATTTGTACGGAGATGCCGGGATCTTTAACTTTAACGTTGACCAGCCCCTGCTCATCGAGGAACTTATTATCAACGGCTGGGCCACGACAACGAGTGGCTTCGACGTCCACGAGAATAATGGCGCAATGGATTTGGAATCACTGGCCCTCCAGCTCGACTCTGGGGATTGGCCCTGA 891 0.5017 MGRSPCCSKEGLNRGAWTALEDKLLISYVQAHGEGKWRNLPLRAGLRRCGKSCRLRWLNYLRPNIKRGNITRDEEDLIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRPSEPSPPRRSRAGKEVVHDQASPVDPRPQLIQTKPSRCNNVVIPVPQHPNKNSNINSSATNQKEVEDEAPKAVNQSDEEGSRSPKPQVINADEDGVPAENHNSDVNMWSSGSDDHFALTAENLYGDAGIFNFNVDQPLLIEELIINGWATTTSGFDVHENNGAMDLESLALQLDSGDWP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1163 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci2g1163 296 SMART sant 66 114 IPR001005 -
Prci2g1163 296 SMART sant 13 63 IPR001005 -
Prci2g1163 296 FunFam MYB-related transcription factor 13 66 - -
Prci2g1163 296 CDD SANT 16 61 IPR001005 -
Prci2g1163 296 Gene3D - 14 66 - -
Prci2g1163 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci2g1163 296 MobiDBLite consensus disorder prediction 143 180 - -
Prci2g1163 296 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci2g1163 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci2g1163 296 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Prci2g1163 296 CDD SANT 71 112 IPR001005 -
Prci2g1163 296 MobiDBLite consensus disorder prediction 119 138 - -
Prci2g1163 296 Gene3D - 70 137 - -
Prci2g1163 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci2g1163 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci2g1163 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci2g1163 296 MobiDBLite consensus disorder prediction 114 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1163 Prci-Chr2 8680118 8681622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1163 1 187 MYB Transcription Factor Family AT4G38620 51.562 1.33e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1163 Myb_DNA-binding 6.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1163 K09422 - mof:131152242 268.085