Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1162 ATGGGGAGGACTCCTTCGCGCAGTAGTGAAGGGCAGAAAAGGGAGGCTTGGACTGCTCAAGAAGACAAGATTCTGGCATCTTATATCAGGGCACATGGCCAGGGCAAATGGGAAAACATCCCCAAACAAACAGGTCTCAGGAGATGCGGAAAGTCGTGCAGGCTTCGATGGATGAATTACTTGAGGCCAGATATCAAAAGAGGCAACATTACACCAGACGAAGAAGACCTCATCCTCAGGCTCCACAAGCTCTTGGGCAACAGATGGTCGCTGATAGCGGGAAGACTTCCAGGGCGAACAGACAATGAAATCAAAAACTACTGGAACACCAACTTAGCCAAGAAGGAGCAAGAGAAGCGATCAGCCGATAAACGTCAAAACGGGGAAAGGGAAATTGCAGAATCAAGAGCGTGCCAGGAGGCTCCGGAGAGGGTTACTTTAGAGCCTACGGAGCCGCCAAACACACACATGGTCGTAGACACGTTAACTCCGATGGAACTCGAGACTGAGTACTGTGCCGAATCTGATGTTGCAGCAGTGGAATCCGTTGCTATTGATGAAGGAAACTTGGACGGGGATTTGATGAATTTTGATTTCAAGGACGTGGAATTTTTGGAGTTTCTGGACTTGGATTTTACTGGACTTGCAGATTTTGACATGTTAATGAACACGGGCGATTCGGAACAAGAAGGCAACCTGGTTGATTCTAAGCCGTTTTCATTTTCTACGGAAACAAATGCTGCGCGGGGGAGTCAGAATGTCACCGATGAGTGA 774 0.4832 MGRTPSRSSEGQKREAWTAQEDKILASYIRAHGQGKWENIPKQTGLRRCGKSCRLRWMNYLRPDIKRGNITPDEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLAKKEQEKRSADKRQNGEREIAESRACQEAPERVTLEPTEPPNTHMVVDTLTPMELETEYCAESDVAAVESVAIDEGNLDGDLMNFDFKDVEFLEFLDLDFTGLADFDMLMNTGDSEQEGNLVDSKPFSFSTETNAARGSQNVTDE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1162 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci2g1162 257 MobiDBLite consensus disorder prediction 115 142 - -
Prci2g1162 257 Gene3D - 71 139 - -
Prci2g1162 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci2g1162 257 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci2g1162 257 CDD SANT 16 61 IPR001005 -
Prci2g1162 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci2g1162 257 Gene3D - 14 66 - -
Prci2g1162 257 MobiDBLite consensus disorder prediction 227 257 - -
Prci2g1162 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 140 - -
Prci2g1162 257 SMART sant 66 114 IPR001005 -
Prci2g1162 257 SMART sant 13 63 IPR001005 -
Prci2g1162 257 MobiDBLite consensus disorder prediction 115 138 - -
Prci2g1162 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci2g1162 257 FunFam MYB-related transcription factor 13 66 - -
Prci2g1162 257 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci2g1162 257 CDD SANT 71 112 IPR001005 -
Prci2g1162 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1162 Prci-Chr2 8673805 8675228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1162 4 115 MYB Transcription Factor Family AT3G13540 71.429 5.48e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g1162 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1162 K09422 - cave:132166606 219.164