Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1139 ATGGAGGCAGACTTTGTGATCAGTCTTGGAGCCAAAGCTCATGTATCCATAATAACATTTTCGGCAACGAGTCCTTCTCTTTCTTCACATCGGAGTCCATATTTCTTTCGAACTGCACAAGTCGATTCTGCTCAAGTAAACGCCATTGTTGCAATCCTGGAAGCTTTTGGGTGGAAAGAAGCAGTGCCCATCTACGTAAACAACGATTACGGGAAGGGGTTCCTACCCTTCTTAACTGATGCTCTGCAACAACGGTATGTTCGAATCCCATATCTGAGTGTCATTTCCCCAACAGCCACTGGTGAAGACATTAGAGGAGAGCTCTACAGGCTGATGACCTTGCAAACCAGAGTGTTCGTTGTTCATGTGTCTTCTGATCTGGGCTCTACTCTCTTCACCATGGCACAGCAGATCGGAATGATGACCGAGGGCTACGTTTGGATCTCAACAGATGGTTTGGCTAATGAGTTGAGCTCTTGGAATTCCTCTGTCATAGAATCAATGCAGGGTGTATTGGCAGTGAGGACCTATATTCCCAAATCAAAAGCACTGGACGATTTCAAAGTTCGATGGAAAAGAAAATTCGTACGAGACAATCCAGCTATGGTTGACACACACTTGAATGTTTTTGGAATATGGGCTTATGATGCGACCACCGCATTAGCCATGGCTGTCGAGAAGGTCGGAATCACCAAGCATGTGTTCCGCAAAAGTAATTCTTCATGCAACTTAAACGATCTTCAAAATCTTGGACTAGTTGTTTCATTAAATGGTGAAAATCTACGCCAAGCTTTATCCAACACTAGCTTCCAAGGCCTCAGTGGAGAATTCACTGTTGTTGATGGACAGTTGCAAGCACCAGCGTTTGAGATAATAAATGTGATTGGCAGTGGAGAGAAAAGGATCGGATTTTGGATCCCACAGAATGGATTAGTTGGAAGTTTGGATTCAAGAAATAAGGCCATGAATTCTCGGCCTAAAAGCAAAATAGCACCCGTTTTATGGCCAGGGGATACATATGTTATTCCAAAAGGTTGGGTCATTCCAACTAATGGCAAAAAAATGAGAATAGGAGTTCCAGTGAGAACTGATTATACTGAATTCGTAAAAGTAACTCGTGACCCAATCACCAATAGAATCGAGGTGACTGGGTTCTGCATAGACGTGTTCAAGGCTGTGTTAGAAGTGCTGCCTTATGCTTTGCCATATGAATTTATCCCTTTTGCAAAGGCCAATGGGGAATCCGCAGGAACGTACGATGAGTTGATCAGCCAAGTTTATTATGGGAACTTCGATGCTGTGGTGGGTGATACAACAATTTTAGCGAACAGGTCCAAGTACGTGGATTTCACATTGCCCTATACGGAATCTGGGGTTACTATGATTGTTCCCATGAAATACGACAGAAAGAAGAATGCGTGGGCCTTCTTAAAGCCACTGACGTGGGAGCTTTGGGCAACAACTGGCTGTTCTTTTGTGTTTATTGGGTTTGTTGTGTGGGTGCTTGAGCACCGAATAAATGATAGTTTCCGAGGTCCTCCGTCACATCAGATTGGCACCTGCTTATGGTTTTCTTTCTCAACTATGGTATCTGCGCATCGAGAGAAATTGATGAGTAACTTGGGCAGATTTGTGGTGATAGTATGGATTTTCGTGGTTCTAATTCTGGTTCAAAGTTATACTGCAAGTCTGACATCACTGCTGACGGTGGAGCAGCTCCATCCAACAATTTCAGATGTGAATCAACTCATTATGAATAGATTGAATGTGGGCTGCAAGAATGGCTCTTTTGAGGAAGAGATATTGAAGGGGTTGGGAGTTAAAGATTACCAATTCAAATTTTATAATTCAAGAAATGGCTGCAATGAGCTTCTCACAAAGGGGAGTGAAAATGGAGGCATTGCCGCTGCTTTTGGAGAAATTCCTTATGTGAAACTTTTTCTCAAGACTTACTGCTCTAAGTATACCATGGTGGATCCCCAGTTTAAAACTGGGGGATTGGGCTTTGTTTTTCCAAAAGGTTCTCCTCTTGTAGCCGACATCTCGAGCGCAATATTAAATGTAACGCAGGGAGATAAAATGACAGCAATAGAGAATGCATGGTTCAAGAAAAATGGTTGCCCAGTGACTGGTGCCTCTGTTTCTTCTAATAGCTTGGGCCTTGAAAGTTTCTGGGGCTTATTTCTCATTGCAGGACTTGCTTCTCTGTTAGCACTCATCATCTTCGTGATCACATTCCTATATCAGCACCGCCACATCTGGTTAGGCGATGATCCCAATGCTTCGACGAGGAAGCGAATGGCTATCTTACTCAAAATTTTTTACCAGAGAGACAACGAGGCATTTCGTGCTATGAAGCGCAGTGACACGAGGAATAAAAGCAATGGTTTTGGGGCAAATGCAACGGAGACTTCCCTTGATACACATTGTCCAGCAAGTCCCTTCACTGAAACTGATTCCAACTCCTCTTTCAGCGGAGGCACACGAACGTTTTCCGCTGCAGATTATGGTCACGCTAATTCCAATGGCAATGCGGATGCTCCTCGGGTCACACAACATTGA 2562 0.4375 MEADFVISLGAKAHVSIITFSATSPSLSSHRSPYFFRTAQVDSAQVNAIVAILEAFGWKEAVPIYVNNDYGKGFLPFLTDALQQRYVRIPYLSVISPTATGEDIRGELYRLMTLQTRVFVVHVSSDLGSTLFTMAQQIGMMTEGYVWISTDGLANELSSWNSSVIESMQGVLAVRTYIPKSKALDDFKVRWKRKFVRDNPAMVDTHLNVFGIWAYDATTALAMAVEKVGITKHVFRKSNSSCNLNDLQNLGLVVSLNGENLRQALSNTSFQGLSGEFTVVDGQLQAPAFEIINVIGSGEKRIGFWIPQNGLVGSLDSRNKAMNSRPKSKIAPVLWPGDTYVIPKGWVIPTNGKKMRIGVPVRTDYTEFVKVTRDPITNRIEVTGFCIDVFKAVLEVLPYALPYEFIPFAKANGESAGTYDELISQVYYGNFDAVVGDTTILANRSKYVDFTLPYTESGVTMIVPMKYDRKKNAWAFLKPLTWELWATTGCSFVFIGFVVWVLEHRINDSFRGPPSHQIGTCLWFSFSTMVSAHREKLMSNLGRFVVIVWIFVVLILVQSYTASLTSLLTVEQLHPTISDVNQLIMNRLNVGCKNGSFEEEILKGLGVKDYQFKFYNSRNGCNELLTKGSENGGIAAAFGEIPYVKLFLKTYCSKYTMVDPQFKTGGLGFVFPKGSPLVADISSAILNVTQGDKMTAIENAWFKKNGCPVTGASVSSNSLGLESFWGLFLIAGLASLLALIIFVITFLYQHRHIWLGDDPNASTRKRMAILLKIFYQRDNEAFRAMKRSDTRNKSNGFGANATETSLDTHCPASPFTETDSNSSFSGGTRTFSAADYGHANSNGNADAPRVTQH 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1139 853 FunFam Glutamate receptor 473 603 - -
Prci2g1139 853 CDD GluR_Plant 353 702 - -
Prci2g1139 853 Pfam Receptor family ligand binding region 2 296 IPR001828 -
Prci2g1139 853 Gene3D - 473 599 - -
Prci2g1139 853 MobiDBLite consensus disorder prediction 791 825 - -
Prci2g1139 853 CDD PBP1_GABAb_receptor_plant 1 311 IPR044440 -
Prci2g1139 853 FunFam Glutamate receptor 41 196 - -
Prci2g1139 853 MobiDBLite consensus disorder prediction 785 825 - -
Prci2g1139 853 SUPERFAMILY Voltage-gated potassium channels 484 568 - -
Prci2g1139 853 Gene3D - 355 472 - -
Prci2g1139 853 SUPERFAMILY Periplasmic binding protein-like I 3 347 IPR028082 -
Prci2g1139 853 FunFam Glutamate receptor 354 473 - -
Prci2g1139 853 Gene3D - 208 354 - -
Prci2g1139 853 FunFam Glutamate receptor 2.7 610 708 - -
Prci2g1139 853 Pfam Ligand-gated ion channel 704 734 IPR001320 GO:0015276|GO:0016020
Prci2g1139 853 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 783 IPR015683 -
Prci2g1139 853 Gene3D - 43 206 - -
Prci2g1139 853 PIRSF IGluLR_plant 1 835 IPR017103 -
Prci2g1139 853 FunFam Glutamate receptor 254 353 - -
Prci2g1139 853 SMART GluR_14 356 704 IPR001320 GO:0015276|GO:0016020
Prci2g1139 853 Gene3D - 600 709 - -
Prci2g1139 853 Pfam Bacterial extracellular solute-binding proteins, family 3 381 703 IPR001638 -
Prci2g1139 853 SUPERFAMILY Periplasmic binding protein-like II 331 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1139 Prci-Chr2 8393811 8397540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1139 1 814 Ion Channels AT2G29120 50.794 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1139 K05387 - qsa:O6P43_019170 1051.2