Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1133 ATGACTCTCATTCTCATTACAAAACCAGGCTCGTCTTCCTCCTCAGGGACTCCCACTCAGACATTGTTTCTGCAGCTTCTCAAGGCCAACTTTTTGATCAGTCTGGGAGACAAAGCTCGTGTTCCCATCATAACCTTTTCGGCAACAAGTCCTTCTCTTGCTTCCCTTCCAAGTTCATATTTTTTTCGAATTGCACAGATCGATTCAGCTCAGGTGAACGCCATCGGCGCAATCGCACAAGCTTTTGGGTGGAAAGAAGCGGTGCCCATTTACGTGGACAACGAGTATGGGAAGGGGGTCATACCCTTCTTGACTAATGCTCTTCAACAAGTCTACGTTCGAATCCCTTATCAGAGTTCTCTTTCACCTTCAGCCACCGATGAAGCTATCAGAGCAGAGCTCTTCAAGCTGATGGCCATGCAAACCAGAGTCTTTGTTGTGCACATGATCCCCAATCCAGGCATGCGACTCTTCTCCATAGCAAGACAGATCGGAATGATGAGCAAGGGCTATGTCTGGATCGTAACAGATGGCTTGGGTAATGTATTGAGCTCTTTGAATTCCTCGGTCATAGAATCGATGCAAGGAGTATTGGGGGTGAGGACTTATATTCCTAAAACAAAGCGGTTAGATGATTTTAAAGTTCGATGGAAAAGAAGATTCTTGCAAAACAATCCTACCCATGTCGATACCGATTTGAATGCCTTTGGAGTATGGGCTTACGATGCGGCCACAGCATTAGCTATGGCTATCGAGAAGGCCGATACCAACAATCTGGGATTTGCTACGAGCAATGCTTCGGCCAATTCAACTGATCTGGAAAGGATCGGAGTTTCAGAAAGTGGTGAAAAACTGCGCGAAGCCTTATCAAACACTAGATTTACAGGCCTCAGTGGAGACTTTAGAGTTGTTAACAGGCAATTGCAAGCTTCGACGTTTGAGATATTGAATGTGATTGGGAACGGAGGAAGAACGATTGGTTTTTGGACCCCACAAAATGGAATAGTCAGAAATGTAGACTCAACTTACACCAAAATGTACTCTACATCAAGTAAGGATCTAGGTTCCATTATATGGCCAGGGGACACGAACTCTATTCCAAAGGGATGGGAAATCCCCACAAATGAGAGGAAGTTGAGGATAGGGGTGCCAGTGAAAAATGGTTATCCTGAATTCGTGGAAGTAACTCGTGACCCCATCACTAATGCAATAGAGGCCACTGGGTTCTGCATTGATGTGTTCAAAGCAGTGTTGGAAGTTCTCCCTTATGCCTTACCTTATGAATTCATCCCTTTTGCCAAGCCAAATGGTGAGAGTGCAGGATCATACAATGAGATGATCAGCCAAGTTTATTCTGGGAACTTTGATGCTGTAGTGGGGGATGTCACAATTATAGCAAACAGGTCTAACTATGTGGATTTCACTTTGCCGTACACTGAATCTGGTGTAACAATGGTAGTTCCTGTAAAAGACAAGAGGAAGAAGAATGCATGGGCCTTCTTAAAGCCATTGACTTGGGATCTCTGGGTGACAATAGCGTGTTCCTTTGTATTCATTGGGTTTGTTGTGTGGGTGCTGGAACATCGAATAAACGAACATTTTAGAGGGCCCCCATCGCACCAGATTGGCACTTCGTTGTGTTTTTCGTTCTCAACCATGGTTTTTGCCCATCGAGAAAAGGTAGTGAGCAACTTGAGTAGATTTGTGGTGATCATATGGGTTTTTGTGGTTCTAATTTTGGTTCAAAGCTACACTGCCAGTCTGACGGCACTTCTAACAGTGGAGCAGCTTAGCCCAACTATAACAAACGTGAATTTACTTATAAATAAAAGAATGTATGTTGGTTTCAAGAGAGGTTCATTTGTGCGTGAAATCTTGAAAAAAATGGGTTTCCTTGATTACCAGTTTAGAATATATAATTCCACGGAGGAATGTAACGGACTGTTTGCAAGAGGAAGTGAAAATGGTGGCATTGCTGCTGCATTCGATGAAGTGCCATATGTGAAAGTCTTTCTTCAAAGTTACTGCTCAAAGTATACCATGGTTGAGCCAACTTTTAAAACTGGGGGCTTTGCCTTTGTGTTCCCTAAAGGATCTCCTCTTGTGGCTGACGTTTCAAGGGCAATCCTGAATGTAACTCAAGGAGATAAAATGAAGGCCATAGAGAATGCGTGGTTCAAGAAAAACAATTGTCCAGATTCTGATGCCTCAATTTCATCAAATAGTCTAGGACTTGAAAGCTTCTGGGGACTATTTCTCATTGTAGGGGTTGCTTCTGCTCTAGTTCTTATTGTCTTCGCCATTAACTTCACGTATCAGCATAGACAAATCTGGTTGCAGTATGATGCTAGTAGTACTTCAAAGTGGAGCCGAATTAGGGAGTTGATGAAGAGGTTCGACCAAAGGGATCTGAGTGCTCACACTTTCAGAAAAAGGGAAATGCGAAATAAAAGTGAAACTTGTAGCGCGTCTCCAAGTACAAATTGCCCCCCAAGTCCATCTAGCCAATCAGAATCAAACTTCTCGTTTTATGGTGGGGGTAGCCCAGTAGCCTTGCGCCACAAGACACGGAAGTAA 2577 0.4366 MTLILITKPGSSSSSGTPTQTLFLQLLKANFLISLGDKARVPIITFSATSPSLASLPSSYFFRIAQIDSAQVNAIGAIAQAFGWKEAVPIYVDNEYGKGVIPFLTNALQQVYVRIPYQSSLSPSATDEAIRAELFKLMAMQTRVFVVHMIPNPGMRLFSIARQIGMMSKGYVWIVTDGLGNVLSSLNSSVIESMQGVLGVRTYIPKTKRLDDFKVRWKRRFLQNNPTHVDTDLNAFGVWAYDAATALAMAIEKADTNNLGFATSNASANSTDLERIGVSESGEKLREALSNTRFTGLSGDFRVVNRQLQASTFEILNVIGNGGRTIGFWTPQNGIVRNVDSTYTKMYSTSSKDLGSIIWPGDTNSIPKGWEIPTNERKLRIGVPVKNGYPEFVEVTRDPITNAIEATGFCIDVFKAVLEVLPYALPYEFIPFAKPNGESAGSYNEMISQVYSGNFDAVVGDVTIIANRSNYVDFTLPYTESGVTMVVPVKDKRKKNAWAFLKPLTWDLWVTIACSFVFIGFVVWVLEHRINEHFRGPPSHQIGTSLCFSFSTMVFAHREKVVSNLSRFVVIIWVFVVLILVQSYTASLTALLTVEQLSPTITNVNLLINKRMYVGFKRGSFVREILKKMGFLDYQFRIYNSTEECNGLFARGSENGGIAAAFDEVPYVKVFLQSYCSKYTMVEPTFKTGGFAFVFPKGSPLVADVSRAILNVTQGDKMKAIENAWFKKNNCPDSDASISSNSLGLESFWGLFLIVGVASALVLIVFAINFTYQHRQIWLQYDASSTSKWSRIRELMKRFDQRDLSAHTFRKREMRNKSETCSASPSTNCPPSPSSQSESNFSFYGGGSPVALRHKTRK 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1133 858 FunFam Glutamate receptor 378 497 - -
Prci2g1133 858 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 804 IPR015683 -
Prci2g1133 858 MobiDBLite consensus disorder prediction 819 844 - -
Prci2g1133 858 MobiDBLite consensus disorder prediction 813 858 - -
Prci2g1133 858 SUPERFAMILY Periplasmic binding protein-like II 356 729 - -
Prci2g1133 858 Pfam Receptor family ligand binding region 30 320 IPR001828 -
Prci2g1133 858 Gene3D - 379 496 - -
Prci2g1133 858 Gene3D - 497 624 - -
Prci2g1133 858 PIRSF IGluLR_plant 24 843 IPR017103 -
Prci2g1133 858 FunFam Glutamate receptor 242 377 - -
Prci2g1133 858 FunFam Glutamate receptor 497 627 - -
Prci2g1133 858 FunFam Glutamate receptor 73 231 - -
Prci2g1133 858 Gene3D - 69 234 - -
Prci2g1133 858 SMART GluR_14 378 728 IPR001320 GO:0015276|GO:0016020
Prci2g1133 858 Pfam Ligand-gated ion channel 728 758 IPR001320 GO:0015276|GO:0016020
Prci2g1133 858 SUPERFAMILY Periplasmic binding protein-like I 33 361 IPR028082 -
Prci2g1133 858 Gene3D - 263 378 - -
Prci2g1133 858 CDD PBP1_GABAb_receptor_plant 26 338 IPR044440 -
Prci2g1133 858 FunFam Glutamate receptor 2.7 634 733 - -
Prci2g1133 858 CDD GluR_Plant 377 726 - -
Prci2g1133 858 Pfam Bacterial extracellular solute-binding proteins, family 3 405 727 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1133 Prci-Chr2 8328068 8331866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1133 27 838 Ion Channels AT2G29120 53.528 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1133 K05387 - qsa:O6P43_019170 1087.4