Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1132 ATGAAAAAGCTTATCGTCTTGTTTATGTGGATTTTATGTCATTCCCCAAGCAGCATGGCTCAGCCAAACGAAAGCGTACCAGTTAAAGTAGGAATAGTACTTGATCTTTCTTCTACAGCAGCAAAGATGGGCTTGAGCTGTATCAACATGTCCCTTTCTGACTTTTATGACTCTCATTCTCATTACAAAACCAGGCTCGTCTTCCTCCTCAGGGACTCCCACTCAGACATTGTTTCTGCAGCTTCTCAAGCTCTGGATCTTATAAAATCAGAGAAAGTGCAAGCCATAATAGGTCCATTCACGTCAATGCAGGCCAACTTTTTGATCAGTCTGGGAGACAAAGCTCGTGTTCCCATCATAACCTTTTCGGCAACAAGTCCTTCTCTTGCTTCCCTTCCAAGTTCATATTTTTTTCGAATTGCACAGATCGATTCAGCTCAGGTGAACGCCATCGGCGCAATCGCACAAGCTTTTGGGTGGAAAGAAGCGGTGCCCATTTACGTGGACAACGAGTATGGGAAGGGGGTCATACCCTTCTTGACTAATGCTCTTCAACAAGTCTACGTTCGAATCCCTTATCAGAGTTCTCTTTCACCTTCAGCCACCGATGAAGCTATCAGAGCAGAGCTCTTCAAGCTGATGGCCATGCAAACCAGAGTCTTTGTTGTGCACATGATCCCCAATCCAGGCATGCGACTCTTCTCCATAGCAAGACAGATCGGAATGATGAGCAAGGGCTATGTCTGGATCGTAACAGATGGCTTGGGTAATGTATTGAGCTCTTTGAATTCCTCGGTCATAGAATCGATGCAAGGAGTATTGGGGGTGAGGACTTATATTCCTAAAACAAAGCGGTTAGATGATTTTAAAGTTCGATGGAAAAGAAGATTCTTGCAAAACAATCCTACCCATGTCGATACCGATTTGAATGCCTTTGGAGTATGGGCTTACGATGCGGCCACAGCATTAGCTATGGCTATCGAGAAGGCCGATACCAACAATCTGGGATTTGCTACGAGCAATGCTTCGGCCAATTCAACTGATCTGGAAAGGATCGGAGTTTCAGAAAGTGGTGAAAAACTGCGCGAAGCCTTATCAAACACTAGATTTACAGGCCTCAGTGGAGACTTTAGAGTTGTTAACAGGCAATTGCAAGCTTCGACGTTTGAGATATTGAATGTGATTGGGAACGGAGGAAGAACGATTGGTTTTTGGACCCCACAAAATGGAATAGTCAGAAATGTAGACTCAACTTACACCAAAATGTACTCTACATCAAGTAAGGATCTAGGTTCCATTATATGGCCAGGGGACACGAACTCTATTCCAAAGGGATGGGAAATCCCCACAAATGAGAGGAAGTTGAGGATAGGGGTGCCAGTGAAAAATGGTTATCCTGAATTCGTGGAAGTAACTCGTGACCCCATCACTAATGCAATAGAGGCCACTGGGTTCTGCATTGATGTGTTCAAAGCAGTGTTGGAAGTTCTCCCTTATGCCTTACCTTATGAATTCATCCCTTTTGCCAAGCCAAATGGTGAGAGTGCAGGATCATACAATGAGATGATCAGCCAAGTTTATTCTGGGAACTTTGATGCTGTAGTGGGGGATGTCACAATTATAGCAAACAGGTCTAACTATGTGGATTTCACTTTGCCGTACACTGAATCTGGTGTAACAATGGTAGTTCCTGTAAAAGACAAGAGGAAGAAGAATGCATGGGCCTTCTTAAAGCCATTGACTTGGGATCTCTGGGTGACAATAGCGTGTTCCTTTGTATTCATTGGGTTTGTTGTGTGGGTGCTGGAACATCGAATAAACGAACATTTTAGAGGGCCCCCATCGCACCAGATTGGCACTTCGTTGTGTTTTTCGTTCTCAACCATGGTTTTTGCCCATCGAGAAAAGGTAGTGAGCAACTTGAGTAGATTTGTGGTGATCATATGGGTTTTTGTGGTTCTAATTTTGGTTCAAAGCTACACTGCCAGTCTGACGGCACTTCTAACAGTGGAGCAGCTTAGCCCAACTATAACAAACGTGAATTTACTTATAAATAAAAGAATGTATGTTGGTTTCAAGAGAGGTTCATTTGTGCGTGAAATCTTGAAAAAAATGGGTTTCCTTGATTACCAGTTTAGAATATATAATTCCACGGAGGAATGTAACGGACTGTTTGCAAGAGGAAGTGAAAATGGTGGCATTGCTGCTGCATTCGATGAAGTGCCATATGTGAAAGTCTTTCTTCAAAGTTACTGCTCAAAGTATACCATGGTTGAGCCAACTTTTAAAACTGGGGGCTTTGCCTTTGTGTTCCCTAAAGGATCTCCTCTTGTGGCTGACGTTTCAAGGGCAATCCTGAATGTAACTCAAGGAGATAAAATGAAGGCCATAGAGAATGCGTGGTTCAAGAAAAACAATTGTCCAGATTCTGATGCCTCAATTTCATCAAATAGTCTAGGACTTGAAAGCTTCTGGGGACTATTTCTCATTGTAGGGGTTGCTTCTGCTCTAGTTCTTATTGTCTTCGCCATTAACTTCACGTATCAGCATAGACAAATCTGGTTGCAGTATGATGCTAGTAGTACTTCAAAGTGGAGCCGAATTAGGGAGTTGATGAAGAGGTTCGACCAAAGGGATCTGAGTGCTCACACTTTCAGAAAAAGGGAAATGCGAAATAAAAGTGAAACTTGTAGCGCGTCTCCAAGTACAAATTGCCCCCCAAGTCCATCTAGCCAATCAGAATCAAACTTCTCGTTTTATGGTGGGGGTAGCCCAGTAGCCTTGCGCCACAAGACACGGAAGTAA 2805 0.4339 MKKLIVLFMWILCHSPSSMAQPNESVPVKVGIVLDLSSTAAKMGLSCINMSLSDFYDSHSHYKTRLVFLLRDSHSDIVSAASQALDLIKSEKVQAIIGPFTSMQANFLISLGDKARVPIITFSATSPSLASLPSSYFFRIAQIDSAQVNAIGAIAQAFGWKEAVPIYVDNEYGKGVIPFLTNALQQVYVRIPYQSSLSPSATDEAIRAELFKLMAMQTRVFVVHMIPNPGMRLFSIARQIGMMSKGYVWIVTDGLGNVLSSLNSSVIESMQGVLGVRTYIPKTKRLDDFKVRWKRRFLQNNPTHVDTDLNAFGVWAYDAATALAMAIEKADTNNLGFATSNASANSTDLERIGVSESGEKLREALSNTRFTGLSGDFRVVNRQLQASTFEILNVIGNGGRTIGFWTPQNGIVRNVDSTYTKMYSTSSKDLGSIIWPGDTNSIPKGWEIPTNERKLRIGVPVKNGYPEFVEVTRDPITNAIEATGFCIDVFKAVLEVLPYALPYEFIPFAKPNGESAGSYNEMISQVYSGNFDAVVGDVTIIANRSNYVDFTLPYTESGVTMVVPVKDKRKKNAWAFLKPLTWDLWVTIACSFVFIGFVVWVLEHRINEHFRGPPSHQIGTSLCFSFSTMVFAHREKVVSNLSRFVVIIWVFVVLILVQSYTASLTALLTVEQLSPTITNVNLLINKRMYVGFKRGSFVREILKKMGFLDYQFRIYNSTEECNGLFARGSENGGIAAAFDEVPYVKVFLQSYCSKYTMVEPTFKTGGFAFVFPKGSPLVADVSRAILNVTQGDKMKAIENAWFKKNNCPDSDASISSNSLGLESFWGLFLIVGVASALVLIVFAINFTYQHRQIWLQYDASSTSKWSRIRELMKRFDQRDLSAHTFRKREMRNKSETCSASPSTNCPPSPSSQSESNFSFYGGGSPVALRHKTRK 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1132 934 FunFam Glutamate receptor 318 453 - -
Prci2g1132 934 FunFam Glutamate receptor 454 573 - -
Prci2g1132 934 Gene3D - 455 572 - -
Prci2g1132 934 MobiDBLite consensus disorder prediction 889 934 - -
Prci2g1132 934 MobiDBLite consensus disorder prediction 895 920 - -
Prci2g1132 934 Gene3D - 573 700 - -
Prci2g1132 934 Pfam Ligand-gated ion channel 804 834 IPR001320 GO:0015276|GO:0016020
Prci2g1132 934 SUPERFAMILY Periplasmic binding protein-like II 432 805 - -
Prci2g1132 934 SMART GluR_14 454 804 IPR001320 GO:0015276|GO:0016020
Prci2g1132 934 FunFam Glutamate receptor 149 307 - -
Prci2g1132 934 FunFam Glutamate receptor 573 703 - -
Prci2g1132 934 Pfam Receptor family ligand binding region 47 396 IPR001828 -
Prci2g1132 934 Pfam Bacterial extracellular solute-binding proteins, family 3 481 803 IPR001638 -
Prci2g1132 934 FunFam Glutamate receptor 2.7 710 809 - -
Prci2g1132 934 Gene3D - 150 310 - -
Prci2g1132 934 SUPERFAMILY Periplasmic binding protein-like I 27 437 IPR028082 -
Prci2g1132 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 880 IPR015683 -
Prci2g1132 934 PIRSF IGluLR_plant 1 919 IPR017103 -
Prci2g1132 934 Gene3D - 24 149 - -
Prci2g1132 934 Gene3D - 339 454 - -
Prci2g1132 934 CDD GluR_Plant 453 802 - -
Prci2g1132 934 CDD PBP1_GABAb_receptor_plant 29 414 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1132 Prci-Chr2 8328068 8331866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1132 23 914 Ion Channels AT2G29120 54.102 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1132 K05387 - qsa:O6P43_019170 1185.24