Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1078 ATGATGTTATTTTTATTTTCACAGGAGAATTTGTGTTCCTTGCAGAAAATGAGTAGCCTGGTTGAGAGGCTTCGTGTGAGATCAGATCGCAAGCCAGTTTATAATATAGATGAGTCAGATGATGATGCTGACTTTTTGCTTGGGAAACCCGGGAGATTTGAGGAAACGTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGGGAAAGTGAAGATCTTCTTAGCTGTGAAACATGTACTTATGCTTTTCATCCTAAGTGCTTACTTCGACCACTTAGAGCTCCACTTCCGGATAGTTGGAGATGCCCTGAATGTGTTAGCCCATTAAATGATATTGAAAAGATATTAGATTGTGAGATGCGCCCAACTGTAGCAGGTGATGATGGCGAGGCCTTGAAACCGGGCTTAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTTTGAAAGCTTTCAAGTCACATCCTCGTTTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCTACAAATACTTCTGAGGAAGATTTTGTTGCCATTCGACCTGAATGGACAATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTTCGTATGATGAATGCTATTGGGAGTCCGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTTACAAAATTTCACTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGCAGTATTAAGGATGGTGCTGAAGAAAAAAAGCAGCAGAAAGAATTTCAACACTACGAACATAGCCCTGGCTTTCTTTCAGGAGGTACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGGCTCGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATCTAGTGGTTGCTCCACTGTCAACTCTCCGAAACTGGGAACGTGAATTCGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAGCTGTCATAAGAGAGTATGAATTTTACTTTCCCAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTTGACTCATTATCCCTGAAGTCTATAATGTGGGAATGCATTATAGTTGATGAAGGTCATCGACTTAAAAACAAAGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACAGGGACTCCTCTTCAGAACAATTTGGATGAACTTTTCATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAGGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCACACCTCCTCCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCAAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAGGAGTATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGACGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAATTACGCAAACTATGCTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGAAGACCCAAAAGAATCGTATAAACAGCTTCTGGAATCATCAGGAAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACCTGCTAGAAGATTACTGTTCGTACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCGGAAAGACAGGTTAGGATAGATCGCTTTAATGCCAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGAGGACTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGGTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATCCATTATGATGATTCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAGGCTATCTTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAATGGAAAGTAAAAATACTGTTAACAATTCAGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAAGAGTTAAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTCGCTGGTCTAGAAGATGTAAGCTCTGATGGTGAAGATGACAACTACGAAGCAGATCTTACTGATGGTGATTCAAATTCAACTGGAACTTCTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGATAGTGCAGAGCCACTTCCTTTGATGGAAGGGGAAGGAAAATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTGCTCCCCGCTTGAAACAAAAGACATATGAAGAAATCAAAGATTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACAGATTCCCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTTGTTAGGATTGCTGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTGCTTTACACAGATGACATCTTATTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAGGGAGGAGCATGATGTAGTGTTACTGCGTGCTGTGTTGAAGCATGGATACGGAAGATGGCAAGCAATTGTTGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCGTAATAAATTTACCAGTACCAGGACAAGTTGGTACCCAGGTGCAAAATGGTGCAAATTCAACAAATGTAGAAGCATTGGCCAACCAATCTGGGGAAAATGGTGGGAATGATACGGTTGCTGATGGTGCACCTGGTTCTGGTGATGTTAGGAACCAACCACAGCTGTATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAATTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAGGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACAAATGAAGCCATGAATGTAGAATTCAAAAATGAACCAAAGGATTCGAATGTTCCAAGTTATAAATCAGGGGAGACTGACAAGCAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTGCTGAAGAATTTCCCTCTGCTGCTTGCGATAATGACCCAAATCGATTGGAATTGGTTCGACTTTACAATGAGATGTGCAGGGTTGCAGAGGAAAATACCATTGGATTGGCTGGAGGACCAGCAGATGGCAGCTTGATGAAGAACTTGCCTCCCCTAGAAACTGTTTGTGAAGACATCAATAAAATTCTATCACCCACTAAGCAAGATGATGGCACTGCAGAAATGCCAATATCGAGCCCGGGTGTCAAATCAGAGGCTTCATCGGAGAGTGAAGTTGTTGGCGCCAGATTGCCCTCAAAACCTCAAGATGACTGCAAACCTGACAATGCAGTAAACCACGAGGGAAAAGATGTGGTGATAGGGCCCGACAACGGAAAAGAAAGCTACAACAGATGGCCCTCAACTCCTCAAGATGAATGCAGACCTGACAATGCAGTAAACAACGAGGGAAAAGATCTGGTGACTGGGTCTGATCTCGGGAAAGAAGAAAGCGGATCAGAGACGAGGGGAGGTGATATAGAAATGGTTGACGCTAGCAATGACGCTGAGTTGGATGAAAACATGGATAAATCTGATCCGGGGGTCGTTGTCTTGGATGAGTAA 4449 0.4102 MMLFLFSQENLCSLQKMSSLVERLRVRSDRKPVYNIDESDDDADFLLGKPGRFEETFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLRPLRAPLPDSWRCPECVSPLNDIEKILDCEMRPTVAGDDGEALKPGLKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASTNTSEEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKFHSRSRRSASSKQKSSIKDGAEEKKQQKEFQHYEHSPGFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSLSLKSIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDSSIDRLLDREQVGVEEAILDDEDDDGFLKAFKVANFEYIDEEAAAEEARKKEMESKNTVNNSDRANYWEDLLRDRYEEHKTEELSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTSSGRRPYRKKARDSAEPLPLMEGEGKSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFAPRLKQKTYEEIKDYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKDPGTLLYTDDILLRYPGLKGGKIWREEHDVVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPVPGQVGTQVQNGANSTNVEALANQSGENGGNDTVADGAPGSGDVRNQPQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPSYKSGETDKQMIDQLPQLEEIAAEEFPSAACDNDPNRLELVRLYNEMCRVAEENTIGLAGGPADGSLMKNLPPLETVCEDINKILSPTKQDDGTAEMPISSPGVKSEASSESEVVGARLPSKPQDDCKPDNAVNHEGKDVVIGPDNGKESYNRWPSTPQDECRPDNAVNNEGKDLVTGSDLGKEESGSETRGGDIEMVDASNDAELDENMDKSDPGVVVLDE 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1078 1482 Pfam Chromo (CHRromatin Organisation MOdifier) domain 118 173 IPR023780 -
Prci2g1078 1482 Pfam Chromo (CHRromatin Organisation MOdifier) domain 210 258 IPR023780 -
Prci2g1078 1482 Pfam Helicase conserved C-terminal domain 626 739 IPR001650 -
Prci2g1078 1482 SUPERFAMILY Chromo domain-like 82 195 IPR016197 -
Prci2g1078 1482 Gene3D - 116 192 - -
Prci2g1078 1482 Pfam SNF2-related domain 323 603 IPR000330 GO:0005524|GO:0140658
Prci2g1078 1482 MobiDBLite consensus disorder prediction 1437 1458 - -
Prci2g1078 1482 Pfam CHD subfamily II, DUF1087 859 920 IPR009463 -
Prci2g1078 1482 Gene3D - 546 770 IPR027417 -
Prci2g1078 1482 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 629 790 IPR001650 -
Prci2g1078 1482 Pfam PHD-finger 70 112 IPR019787 -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 1346 1482 - -
Prci2g1078 1482 ProSiteProfiles Chromo and chromo shadow domain profile. 116 199 IPR000953 -
Prci2g1078 1482 SMART DUF1087_2 858 923 IPR009463 -
Prci2g1078 1482 SMART DUF1086_2 928 1087 IPR009462 GO:0003677|GO:0006338
Prci2g1078 1482 MobiDBLite consensus disorder prediction 260 286 - -
Prci2g1078 1482 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 68 1321 - -
Prci2g1078 1482 ProSiteProfiles Zinc finger PHD-type profile. 67 114 IPR019787 -
Prci2g1078 1482 SMART ultradead3 299 512 IPR014001 -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 1465 1482 - -
Prci2g1078 1482 ProSiteProfiles Chromo and chromo shadow domain profile. 209 271 IPR000953 -
Prci2g1078 1482 SMART chromo_7 115 185 IPR000953 -
Prci2g1078 1482 SMART chromo_7 207 261 IPR000953 -
Prci2g1078 1482 Gene3D - 295 545 IPR038718 -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 270 286 - -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 1168 1192 - -
Prci2g1078 1482 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 501 IPR014001 -
Prci2g1078 1482 CDD SF2_C_SNF 624 750 - -
Prci2g1078 1482 SUPERFAMILY Chromo domain-like 196 261 IPR016197 -
Prci2g1078 1482 ProSitePatterns Zinc finger PHD-type signature. 70 111 IPR019786 -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 1410 1424 - -
Prci2g1078 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 536 IPR027417 -
Prci2g1078 1482 CDD CD2_tandem 207 256 - -
Prci2g1078 1482 SMART helicmild6 655 739 IPR001650 -
Prci2g1078 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 794 IPR027417 -
Prci2g1078 1482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 115 IPR013083 -
Prci2g1078 1482 CDD CD1_tandem 114 189 - -
Prci2g1078 1482 Gene3D - 195 258 - -
Prci2g1078 1482 SMART PHD_3 69 112 IPR001965 -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 919 970 - -
Prci2g1078 1482 Gene3D - 1053 1197 - -
Prci2g1078 1482 MobiDBLite consensus disorder prediction 919 940 - -
Prci2g1078 1482 Pfam CHD subfamily II, SANT-like domain 951 1076 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1078 Prci-Chr2 7923418 7942349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1078 325 800 RAD5 or RAD16-like Gene Family AT1G02670 22.842 5.83e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci2g1078 SNF2_N 9.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1078 K11643 - gmx:100790230 2259.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1078 2 7923418 7942349 Prci8g0033 8 165551 192069 CCT