Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1077 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTGAGATCAGATCGCAAGCCAGTTTATAATATAGATGAGTCAGATGATGATGCTGACTTTTTGCTTGGGAAACCCGGGAGATTTGAGGAAACGTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGGGAAAGTGAAGATCTTCTTAGCTGTGAAACATGTACTTATGCTTTTCATCCTAAGTGCTTACTTCGACCACTTAGAGCTCCACTTCCGGATAGTTGGAGATGCCCTGAATGTGTTAGCCCATTAAATGATATTGAAAAGATATTAGATTGTGAGATGCGCCCAACTGTAGCAGGTGATGATGGCGAGGCCTTGAAACCGGGCTTAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTTTGAAAGCTTTCAAGTCACATCCTCGTTTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCTACAAATACTTCTGAGGAAGATTTTGTTGCCATTCGACCTGAATGGACAATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTTCGTATGATGAATGCTATTGGGAGTCCGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTTACAAAATTTCACTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGCAGTATTAAGGATGGTGCTGAAGAAAAAAAGCAGCAGAAAGAATTTCAACACTACGAACATAGCCCTGGCTTTCTTTCAGGAGGTACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGGCTCGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATCTAGTGGTTGCTCCACTGTCAACTCTCCGAAACTGGGAACGTGAATTCGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAGCTGTCATAAGAGAGTATGAATTTTACTTTCCCAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTTGACTCATTATCCCTGAAGTCTATAATGTGGGAATGCATTATAGTTGATGAAGGTCATCGACTTAAAAACAAAGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACAGGGACTCCTCTTCAGAACAATTTGGATGAACTTTTCATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAGGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCACACCTCCTCCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCAAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAGGAGTATTATAAGGCAATTTTGACACGTAATTATCAAATATTAACTCGACGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAATTACGCAAACTATGCTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGAAGACCCAAAAGAATCGTATAAACAGCTTCTGGAATCATCAGGAAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACCTGCTAGAAGATTACTGTTCGTACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCGGAAAGACAGGTTAGGATAGATCGCTTTAATGCCAAAAATTCCTCGAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGAGGACTGGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAGAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGGTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATCCATTATGATGATTCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAGGCTATCTTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAATGGAAAGTAAAAATACTGTTAACAATTCAGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATGAAGAGCATAAAACTGAAGAGTTAAGTTCCTTGGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTCGCTGGTCTAGAAGATGTAAGCTCTGATGGTGAAGATGACAACTACGAAGCAGATCTTACTGATGGTGATTCAAATTCAACTGGAACTTCTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGATAGTGCAGAGCCACTTCCTTTGATGGAAGGGGAAGGAAAATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTGCTCCCCGCTTGAAACAAAAGACATATGAAGAAATCAAAGATTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACAGATTCCCCTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTTGTTAGGATTGCTGTTCTTCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTGCTTTACACAGATGACATCTTATTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAGGGAGGAGCATGATGTAGTGTTACTGCGTGCTGTGTTGAAGCATGGATACGGAAGATGGCAAGCAATTGTTGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCGTAATAAATTTACCAGTACCAGGACAAGTTGGTACCCAGGTGCAAAATGGTGCAAATTCAACAAATGTAGAAGCATTGGCCAACCAATCTGGGGAAAATGGTGGGAATGATACGGTTGCTGATGGTGCACCTGGTTCTGGTGATGTTAGGAACCAACCACAGCTGTATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAATTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAGGGGCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACAAATGAAGCCATGAATGTAGAATTCAAAAATGAACCAAAGGATTCGAATGTTCCAAGTTATAAATCAGGGGAGACTGACAAGCAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTGCTGAAGAATTTCCCTCTGCTGCTTGCGATAATGACCCAAATCGATTGGAATTGGTTCGACTTTACAATGAGATGTGCAGGGTTGCAGAGGAAAATACCATTGGATTGGCTGGAGGACCAGCAGATGGCAGCTTGATGAAGAACTTGCCTCCCCTAGAAACTGTTTGTGAAGACATCAATAAAATTCTATCACCCACTAAGCAAGATGATGGCACTGCAGAAATGCCAATATCGAGCCCGGGTGTCAAATCAGAGGCTTCATCGGAGAGTGAAGTTGTTGGCGCCAGATTGCCCTCAAAACCTCAAGATGACTGCAAACCTGACAATGCAGTAAACCACGAGGGAAAAGATGTGGTGATAGGGCCCGACAACGGAAAAGAAAGCTACAACAGATGGCCCTCAACTCCTCAAGATGAATGCAGACCTGACAATGCAGTAAACAACGAGGGAAAAGATCTGGTGACTGGGTCTGATCTCGGGAAAGAAGAAAGCGGATCAGAGACGAGGGGAGGTGATATAGAAATGGTTGACGCTAGCAATGACGCTGAGTTGGATGAAAACATGGATAAATCTGATCCGGGGGTCGTTGTCTTGGATGAGTAA 4404 0.4117 MSSLVERLRVRSDRKPVYNIDESDDDADFLLGKPGRFEETFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLRPLRAPLPDSWRCPECVSPLNDIEKILDCEMRPTVAGDDGEALKPGLKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASTNTSEEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKFHSRSRRSASSKQKSSIKDGAEEKKQQKEFQHYEHSPGFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSLSLKSIMWECIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDSSIDRLLDREQVGVEEAILDDEDDDGFLKAFKVANFEYIDEEAAAEEARKKEMESKNTVNNSDRANYWEDLLRDRYEEHKTEELSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTSSGRRPYRKKARADSAEPLPLMEGEGKSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFAPRLKQKTYEEIKDYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKDPGTLLYTDDILLRYPGLKGGKIWREEHDVVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPVPGQVGTQVQNGANSTNVEALANQSGENGGNDTVADGAPGSGDVRNQPQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPSYKSGETDKQMIDQLPQLEEIAAEEFPSAACDNDPNRLELVRLYNEMCRVAEENTIGLAGGPADGSLMKNLPPLETVCEDINKILSPTKQDDGTAEMPISSPGVKSEASSESEVVGARLPSKPQDDCKPDNAVNHEGKDVVIGPDNGKESYNRWPSTPQDECRPDNAVNNEGKDLVTGSDLGKEESGSETRGGDIEMVDASNDAELDENMDKSDPGVVVLDE 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1077 1467 MobiDBLite consensus disorder prediction 1450 1467 - -
Prci2g1077 1467 SUPERFAMILY Chromo domain-like 180 245 IPR016197 -
Prci2g1077 1467 Gene3D - 100 176 - -
Prci2g1077 1467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 485 IPR014001 -
Prci2g1077 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Prci2g1077 1467 Pfam CHD subfamily II, SANT-like domain 935 1061 IPR009462 GO:0003677|GO:0006338
Prci2g1077 1467 MobiDBLite consensus disorder prediction 1153 1177 - -
Prci2g1077 1467 SMART ultradead3 283 496 IPR014001 -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 244 270 - -
Prci2g1077 1467 SUPERFAMILY Chromo domain-like 66 179 IPR016197 -
Prci2g1077 1467 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Prci2g1077 1467 Gene3D - 1038 1182 - -
Prci2g1077 1467 Pfam CHD subfamily II, DUF1087 843 904 IPR009463 -
Prci2g1077 1467 Pfam SNF2-related domain 307 587 IPR000330 GO:0005524|GO:0140658
Prci2g1077 1467 SMART PHD_3 53 96 IPR001965 -
Prci2g1077 1467 Pfam PHD-finger 54 96 IPR019787 -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 254 270 - -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 1331 1467 - -
Prci2g1077 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Prci2g1077 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 194 242 IPR023780 -
Prci2g1077 1467 Gene3D - 179 242 - -
Prci2g1077 1467 CDD SF2_C_SNF 608 734 - -
Prci2g1077 1467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 774 IPR001650 -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 903 955 - -
Prci2g1077 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 100 183 IPR000953 -
Prci2g1077 1467 SMART DUF1087_2 842 907 IPR009463 -
Prci2g1077 1467 Gene3D - 530 754 IPR027417 -
Prci2g1077 1467 CDD CD2_tandem 191 240 - -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 1395 1409 - -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 1422 1443 - -
Prci2g1077 1467 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Prci2g1077 1467 Gene3D - 279 529 IPR038718 -
Prci2g1077 1467 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 58 1306 - -
Prci2g1077 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 778 IPR027417 -
Prci2g1077 1467 SMART chromo_7 191 245 IPR000953 -
Prci2g1077 1467 SMART chromo_7 99 169 IPR000953 -
Prci2g1077 1467 SMART helicmild6 639 723 IPR001650 -
Prci2g1077 1467 SMART DUF1086_2 912 1072 IPR009462 GO:0003677|GO:0006338
Prci2g1077 1467 CDD CD1_tandem 98 173 - -
Prci2g1077 1467 Pfam Helicase conserved C-terminal domain 610 723 IPR001650 -
Prci2g1077 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 193 255 IPR000953 -
Prci2g1077 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 520 IPR027417 -
Prci2g1077 1467 MobiDBLite consensus disorder prediction 903 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1077 Prci-Chr2 7923418 7944383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1077 309 784 RAD5 or RAD16-like Gene Family AT1G02670 22.842 5.45e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci2g1077 SNF2_N 9.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1077 K11643 - gmx:100790230 2261.88