Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1065 ATGGCGTACCACAACCACCATCTCTCTCAAGACCTACCGCTCCATCATTTCACGGAGCAATCTCATCAGCCTCCGCAGCAGCAGCAGAACCAGGCGCTGACTGACAACTCCTTGCGAACGATATTGCAGGACCCCGTCAGTAAGGCCGGCTCCGATCCCCACCAACACCATCACCCCCTTCAAACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACGCCGACAACAATAACGGCAACAGCAGTAACACCACTGCTCCTAACAATACCAACGCCACCAATTTCCTCAACCTCCACACCGCCGCCTCCGACTCCACAGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCAACCGGAATCATAGTGATGTCATTGACGACGTTACCGCCGGGGACTCTCTCATCGCGGGCGCGACTCTGTCCCCCGAGTCTGCCGATTTAAAGGCCACCGGCGACAACCTTAATAGCAAGGGCGAGGCGGTGGTAGTGGATAGCGCCGGTGCCACTGGGGACGGCTTGATGAGCTGGCAGAATGCTAGGTTCAAGGCGGAGATTCTAGGCCACCCGCTGTACGAGCAGCTGCTATCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTTGATCAGTTGCCGAGAATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGTTGGCGCACGGGGGCCAGAGCATGGTAGGGGACGACAAGGAACTCGATCAGTTCATGTCGCACTACGTCTTGTTGCTCTGTTCATTCAAAGAACAGCTTCAACAGCATGTCAGAGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCAGGAGAAGGCACAGGGGCAACAATGTCAGACGATGAAGACGACCAGGTAGACAGTGATGCCAACTTGTTTGATGGTAGCTTGGATGGTTCGGACATGGGATTTGGCCCCCTTATTCCAACGGAGAATGAGAGGTCCCTCATGGAGCGTGTGAGGCAGGAATTAAAGCATGAACTCAAACAGGGTTACAAGGAGAAAATTGTCGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAGCTTCCCGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAATCACATTCTAAGTGGCCTTACCCAACGGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCCTCCACCTCTACGGTTTTGAAGAGCAAGCGCAAGAGGTGA 1356 0.5376 MAYHNHHLSQDLPLHHFTEQSHQPPQQQQNQALTDNSLRTILQDPVSKAGSDPHQHHHPLQTAPNWLNNALLRTHYADNNNGNSSNTTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILNRNHSDVIDDVTAGDSLIAGATLSPESADLKATGDNLNSKGEAVVVDSAGATGDGLMSWQNARFKAEILGHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALAHGGQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1065 451 SUPERFAMILY Homeodomain-like 376 439 IPR009057 -
Prci2g1065 451 SMART KNOX1_2 187 231 IPR005540 GO:0003677|GO:0005634
Prci2g1065 451 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Prci2g1065 451 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 436 - -
Prci2g1065 451 Pfam KNOX1 domain 190 230 IPR005540 GO:0003677|GO:0005634
Prci2g1065 451 Pfam KNOX2 domain 247 297 IPR005541 GO:0003677|GO:0005634
Prci2g1065 451 SMART ELK_2 354 375 IPR005539 GO:0003677
Prci2g1065 451 MobiDBLite consensus disorder prediction 297 316 - -
Prci2g1065 451 SMART KNOX2_2 243 298 IPR005541 GO:0003677|GO:0005634
Prci2g1065 451 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Prci2g1065 451 SMART HOX_1 376 441 IPR001356 GO:0003677
Prci2g1065 451 CDD homeodomain 377 438 IPR001356 GO:0003677
Prci2g1065 451 Pfam ELK domain 354 375 IPR005539 GO:0003677
Prci2g1065 451 Gene3D - 373 445 - -
Prci2g1065 451 ProSiteProfiles ELK domain profile. 354 374 IPR005539 GO:0003677
Prci2g1065 451 FunFam homeobox protein knotted-1-like 3 isoform X1 375 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1065 Prci-Chr2 7781294 7785285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1065 1 451 Homeobox Transcription Factor Family AT5G25220 66.949 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci2g1065 KNOX2 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1065 - - pcin:129303573 849.351