Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1058 ATGGGGAAGCCCACCGGTAAGAAGAAGGATCCTGCAACACAGAAGGCTGCAAATGCGAGCGGCAAGCCGAGCAAGCCCGCTGAGAGGACTTCCAAAGCTTTCGACGAAGACACAGCAATCTTCATCAACATGTCACAAGATCTCAAGGAAGAAGGCAATAGACTCTTTCAGAAGAGGGACCACGAAGGGGCTATGTTGAAGTATGAAAAGGCCCTCAAGCTTCTTCCCGGAAACCACATAGACGTGGCACACTTGCGCACCAATATGGCTGCGTGTTATATGCAGCTCGGTCTTGGAGAGTACCCGCGAGCAATTACTGAATGTAATTTAGCTCTCGAAGTATCACCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGATTCGATTATGCACTTGGAGATGTTAACTTTGTTTTGAGCGTGGAGCCTAATAATCTTAATGCATTGGAGATTCTCGGGAGTTTGAAAAAGACCATGGAAGAAAAGGGCATCACTATTGATGACAAAGATTTGGCAAGTTTAGAGCAGCCTACCACTGCTCCTATGCGTAAAGTGGTACGAGAAAAACTAAAGAAAAAGAAAAGCAAAAAAAGTGAGGGCAAGGCAAAGGATAAGGTGATTCTTGAGGATAATGCGAATGCAGTTAAAGATAAAGAAGTGGTGACAAAGACAATAGCGAAAAAAGAAGTGGATCTGGCGCCTGTTAAGGAAGAAAAAGTAGTCGCAAGGACGGTGAAGTTGGTATTTGGAGAGGATATAAGGTGGGCGCAGTTGCCATTGAATTGTAGCATGAGATTGGTGAGGGATATAATTAAGGATCGATTCCCTGGATTGAAGGGTGTTCTTGTTAAGTATAGGGATCAAGAAGGTGATTTGGTTACTATCACGACTACCGATGAATTAAGATTAGCTGAATCTTCAGGTGATGTCTTGGGTTCTCTTCGACTCTATATTGCTGAAGTCAATCCAGAGGAGGAACCAACTTACGATGGAATAACCAATGGGGATGAGATGCTAGGTGATGGTATTGAGCATGGGCCAACAGAAGCAGGCAAGGATTAGCAAATAATGACTAGTGTGGAGGATTGGATAATCCAGTTTGCTAGGATGTTCAAGAACCATGTCGGGTTTGACTCTGATTCATATTTGGATATGCATGAGGTTGGAATGAAGCTATATTCAGAAGCCTTGGAGGATGTGGTAACAAGTGACGATGCTCAAGAGCTTTTTCAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTAGCATTATTTAATTGGGGGAATGTTCACATGTCCAGGGCAAGGAGACGTGTTTCCATCTCAGAGGACGGGTCAAAAGAATCTGCTTATGAGGGTTTTAAAGCTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGATGAGATATGAAGAAGCCTTGAAAATCAAACCAGACTTCTATGAGGGATTTCTGGCACTTGGGCACCAGCAATTTGAGCAAGCAAAGCTCTGCTGGTATTATGCAACGGCATGCAAAATGAATTTAGAGGATGGCCCTTCCAGTGAGGTTTTACAACTATACAACAAGGCAGAGGACAGCATGGATAGAGGCATGCTGATGTGGGAAGAGATTGAAGAGCAGCGCTTAAATGGGCTATCCAAATTAGATAAATATAAAGTGCAGTTGGAAAAAATGGGTTTAGGAGATCTCCTCAAGGATATTTCTGATGAAGCTGCAGAGCAGGCTGCAAGCGTGAAGTCACAAATATATATTTTATGGGGCACTATATTGTATGAGCGTTCTGTTGTGGAATATAAGATAGGCTTGCCATCATGGGAGGAATGTTTGGAGGTTGCAGTTGAGAAGTTTGAACTTGCCGGAGCTTCTCCAACGGACATAGGGGTCATGGTAAAGAATCATTGTTCCAATCACACAGCACTAGAAGGCTTGGGGTTCAAAATTGATGAAATAGTACAGGCATGGAATGAAATGTATGATGCCCAGAGGTGGCACTTTGGTGTACCATCATTTCGTCTCGAACCAATGTTCCGGCGGCGTGTTCCGAAACTTCTTCACATCTTGGAGCATTTTTGA 2106 0.4349 MGKPTGKKKDPATQKAANASGKPSKPAERTSKAFDEDTAIFINMSQDLKEEGNRLFQKRDHEGAMLKYEKALKLLPGNHIDVAHLRTNMAACYMQLGLGEYPRAITECNLALEVSPRYSKALLRRAKCYEALNRFDYALGDVNFVLSVEPNNLNALEILGSLKKTMEEKGITIDDKDLASLEQPTTAPMRKVVREKLKKKKSKKSEGKAKDKVILEDNANAVKDKEVVTKTIAKKEVDLAPVKEEKVVARTVKLVFGEDIRWAQLPLNCSMRLVRDIIKDRFPGLKGVLVKYRDQEGDLVTITTTDELRLAESSGDVLGSLRLYIAEVNPEEEPTYDGITNGDEMLGDGIEHGPTEAGKDXQINXTSVEDWIIQFARMFKNHVGFDSDSYLDMHEVGMKLYSEALEDVVTSDDAQELFQIAADKFQEMAALALFNWGNVHMSRARRRVSISEDGSKESAYEGFKAAYEWARKEYKKAEMRYEEALKIKPDFYEGFLALGHQQFEQAKLCWYYATACKMNLEDGPSSEVLQLYNKAEDSMDRGMLMWEEIEEQRLNGLSKLDKYKVQLEKMGLGDLLKDIXSDEAAEQAASVKSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMVKNHCSNHTALEGLGFKIDEIVQAWNEMYDAQRWHFGVPSFRLEPMFRRRVPKLLHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1058 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Prci2g1058 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Prci2g1058 703 SMART tpr_5 45 78 IPR019734 GO:0005515
Prci2g1058 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Prci2g1058 703 Gene3D - 243 328 - -
Prci2g1058 703 Gene3D Tetratricopeptide repeat domain 43 170 IPR011990 GO:0005515
Prci2g1058 703 CDD PB1 251 325 - -
Prci2g1058 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Prci2g1058 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Prci2g1058 703 SUPERFAMILY TPR-like 402 505 IPR011990 GO:0005515
Prci2g1058 703 Pfam PB1 domain 250 325 IPR000270 GO:0005515
Prci2g1058 703 MobiDBLite consensus disorder prediction 334 361 - -
Prci2g1058 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Prci2g1058 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Prci2g1058 703 MobiDBLite consensus disorder prediction 1 33 - -
Prci2g1058 703 SUPERFAMILY CAD & PB1 domains 247 337 - -
Prci2g1058 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Prci2g1058 703 SMART PB1_new 249 328 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1058 Prci-Chr2 7731193 7735372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1058 28 152 Calmodulin-binding Proteins AT3G25230 32.117 3.24e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1058 K26538 - qsa:O6P43_015720 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1058 2 7731193 7735372 Prci8g0014 8 38524 41897 CCT