Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1030 ATGGAGCTTCAGTTAGGTCTGGCTCTCCCAGCTCAGAATCCTAGCGAGGAATTCAACCTATCCAACTATGGCTTACCCAGTTTCTGTGTTGAAAGCCACAAACATGTGAAAAACAAGCGTAGCTTTGAAGAGTCCCTTGGACTTTCTTCGAAAAATCTGCCTTTGTTGGTATGGAATGGCCAGCCAAACGAGGAAGATGACCGTGGTGGGAAGAAAAACAGAAACACTTATCCAGAAAACGAGAATAACGAAGAAGAAAACCTTTTAGTGGGATGGCCGCCCATTAAGTCATGGAGGAAGAAGAAAATCCATCAGCAACACCAAAGAGTCCCGATCAGGAACGATAGGGTTCTAGGTGAGAATGGAAATAGAGGATCAAACTCCTTATTTGTTAAGGTTAAGATGGAAGGAGTAGCAATAGGACGGAAGATCAATTTGAGGCCTTACAGTTCTTATGAGACTCTTACAAATACGTTAATGAGCATGTTTGATAAATACCAGAAACCTAAGGAAGATAAGGCAAGTTACACACTCAAGTATCAAGACAAAGAAGGTGACTGGCTGGTTGCTGGTGATGTTCCCTGGCAATCATTCATTGATTCCGTGAAGCGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAAGCCACTCTTGGCAGCAAATAG 663 0.4329 MELQLGLALPAQNPSEEFNLSNYGLPSFCVESHKHVKNKRSFEESLGLSSKNLPLLVWNGQPNEEDDRGGKKNRNTYPENENNEEENLLVGWPPIKSWRKKKIHQQHQRVPIRNDRVLGENGNRGSNSLFVKVKMEGVAIGRKINLRPYSSYETLTNTLMSMFDKYQKPKEDKASYTLKYQDKEGDWLVAGDVPWQSFIDSVKRLEIVRSGVEEATLGSK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1030 220 Pfam AUX/IAA family 33 167 IPR033389 -
Prci2g1030 220 Pfam AUX/IAA family 174 210 IPR033389 -
Prci2g1030 220 MobiDBLite consensus disorder prediction 64 81 - -
Prci2g1030 220 Gene3D - 123 218 - -
Prci2g1030 220 ProSiteProfiles PB1 domain profile. 128 215 IPR000270 GO:0005515
Prci2g1030 220 MobiDBLite consensus disorder prediction 57 85 - -
Prci2g1030 220 SUPERFAMILY CAD & PB1 domains 124 207 - -
Prci2g1030 220 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 210 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1030 Prci-Chr2 7569977 7573584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1030 131 210 B3 DNA Binding Superfamily AT3G61830 37.037 5.92e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Prci2g1030 AUX_IAA 2.3e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1030 K14484 - qsa:O6P43_019450 236.884