Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1001 ATGTTGGTTCTTCTGTGTGTCTCAGCCTTGCTCGTGGAAGCTTGTTCGAGCTCCATGATTGACCACCTCACCACTTTCTCGTTCCCATCGTTTAGCCCTGAAAGTTGCAGCAACGGAGAGTTGCTGTGTATGGGCTCGGCGGCATCAGGTGAGGGGTCTGTGAGGCTGACTTCTGAGCCATGGATCAATTCGAGTTCGGCGTCTAATTCTTCAGCGACGAACAGGATTGGAAGGGTATTGTACCGTGAAAAGGTTAGAGCTTGGCCGGCGTTGATCAGCACCTCGTTCACAATGAGGATCACTCCGATGGATAATTCAAGCACATCCGGTGATGGACTTGCTTTCGTTTTTGCCAAAGATCGTAACCCCTCGCCACCTGCTAGCTACGGCTCCTATATGGGCTTATTCGATGACTCTACTCAAGGTGAACTTTTGCAACAAATGGCTGTGGCGTTTGACACATTCAAGAACGAATTTGATCAAGATGGAAACCACATTGGGATAATCACAGAAAGCATCATAAGTCCAGTTGATACGGTGAGCCTAAATAGCTATGGATTTACCCTAAAGAGTGGACGACACATTCAGGTTAAAATAGAGTACGATGGTTCGATTAGCATGCTTCATGTCTCTCTCGGATACCCTGAAAGTCAGTTAAAGAGCGTTCTTAGCCTTGCAATTGATCTGCCGAATATAGTGCCAAGCACCGTTTATGTTGGTTTCACAGCTTCAACTGGCAAAAGCTTGCCTGAAAGCCATGAAGTCCTGAACTGGGTGTTCACATCAGCACCTTTGCCCTTGAGTTCCAATAAAACCAGCAAAAACGAGACCACTAAGACCATTCTGATCATTGTCATACCCATTTTTTTGGTCACTTTGGCAAGCTCAGTTCTATTTATTTGGCATACTTTGAAGAAAGGAAAGAAGACTGAGAGGAGTGACAAGCAGGATGAAATAGAATGCTTATCAATGACAGCTCCAGACATCCCCAAAGGGTTCTCTTTCAGGCAATTGTATGTGGCTACTAGCAGCTTCTGCAAGGAGAATCTGTTAGGAAGAGGTGGATTTGGTTGTGTTTATAAAGGCCTCCTATTAGATCCTCCCAAAACCATAGCAGTCAAGAAGATTTCTGCAAACTCTAAACAAGGTGAAAGAGAGTATTTTGCTGAAATATGTACCATAGGTCGGCTTAGGCATAAGAACATAGTACAACTACTAGGGTGGTGCCATGAAGGTGAATATCTTCTCTTAGTGTATGAGTACATGCAAAACGGAAGCTTGGATCACTTCATAGGCAAGGACATTCTGAACTGGCAAACAAGGCACAAGATATTAGTAGGAATTGCATCAGCATTACTCTACCTTCACGAAGAGTGTGGAAACCCTGTTGTTCACAGGGATGTTAAACCGAACAACATAATGCTAGACTCGGATTTCAACGCTCATCTGGGAGATTTTGGCCTGGCAAGATTACTTCAGGATGAAGAATCAGTAATCACAAATCTCGCTGGAACTCCTGGATATCTGGCTCCGGAAGTAGGCTTCACGGGAAAAGCCACCCCAGAATCTGATGTGTACAGTTTTGGTATGGTAGTGCTTGAAGTAGTGTGTGGAAGAAGATCAAAAAGCACAACGGCAGAGAACAGTTTGGTGGACTATGTTTGGAACATGCATAGTGAGAATGCATTGATGGAGTGTGTGGATGCACTATTAAGAGATCAGTTCGATGAGGAAGAAGCTAGACGGGCATTGATGGTTGGGTTGGCATGTTTGTATCCAGATTCAGTTTTTAGGCCAAAGATGAGAAAAGTGGTGCACATTTTGCTCGACCCAAATGAGCCTCTAATGGAGTTACCAGGAGTAAGACCTTGTGGAGTTTATGTATCATCAGTTTCTTCGTCTACTTCAACCTCGAACTTTGGCTCCAGATCAAGTTCTTATCCATTTCCTCTGCTTCAGTTGGCAACAACATCTTCAGATGAAATTACAATCGTGTACGATCAACAGTGA 2010 0.4423 MLVLLCVSALLVEACSSSMIDHLTTFSFPSFSPESCSNGELLCMGSAASGEGSVRLTSEPWINSSSASNSSATNRIGRVLYREKVRAWPALISTSFTMRITPMDNSSTSGDGLAFVFAKDRNPSPPASYGSYMGLFDDSTQGELLQQMAVAFDTFKNEFDQDGNHIGIITESIISPVDTVSLNSYGFTLKSGRHIQVKIEYDGSISMLHVSLGYPESQLKSVLSLAIDLPNIVPSTVYVGFTASTGKSLPESHEVLNWVFTSAPLPLSSNKTSKNETTKTILIIVIPIFLVTLASSVLFIWHTLKKGKKTERSDKQDEIECLSMTAPDIPKGFSFRQLYVATSSFCKENLLGRGGFGCVYKGLLLDPPKTIAVKKISANSKQGEREYFAEICTIGRLRHKNIVQLLGWCHEGEYLLLVYEYMQNGSLDHFIGKDILNWQTRHKILVGIASALLYLHEECGNPVVHRDVKPNNIMLDSDFNAHLGDFGLARLLQDEESVITNLAGTPGYLAPEVGFTGKATPESDVYSFGMVVLEVVCGRRSKSTTAENSLVDYVWNMHSENALMECVDALLRDQFDEEEARRALMVGLACLYPDSVFRPKMRKVVHILLDPNEPLMELPGVRPCGVYVSSVSSSTSTSNFGSRSSSYPFPLLQLATTSSDEITIVYDQQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1001 669 Gene3D Transferase(Phosphotransferase) domain 1 422 614 - -
Prci2g1001 669 Pfam Legume lectin domain 25 272 IPR001220 GO:0030246
Prci2g1001 669 FunFam probable L-type lectin-domain containing receptor kinase S.5 422 616 - -
Prci2g1001 669 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524
Prci2g1001 669 FunFam serine/threonine-protein kinase PBS1-like 309 421 - -
Prci2g1001 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 262 IPR013320 -
Prci2g1001 669 SUPERFAMILY Protein kinase-like (PK-like) 330 637 IPR011009 -
Prci2g1001 669 PANTHER - 65 610 - -
Prci2g1001 669 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Prci2g1001 669 SMART serkin_6 345 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g1001 669 CDD STKc_IRAK 351 608 - -
Prci2g1001 669 Gene3D - 22 285 - -
Prci2g1001 669 CDD lectin_legume_LecRK_Arcelin_ConA 24 262 IPR001220 GO:0030246
Prci2g1001 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Prci2g1001 669 Pfam Protein kinase domain 347 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g1001 669 ProSiteProfiles Protein kinase domain profile. 345 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1001 Prci-Chr2 7439303 7443362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1001 26 633 Receptor kinase-like Gene Family AT5G55830 38.081 8.32e-117 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Prci2g1001 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1001 - - ccaj:109810929 783.097