Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0958 ATGAAAGTTGCTTATTTTGCTGCATCCCTGTTTCCAAGTATACAAATAAAATACCACACAGTTGAGATACCTGAGGCACTGGAGTATTATTCATTTTGGCACCACTCAGGAGCTGTATCTAAAGAACTATATCTTAAAGGTCCATCCTACACTTGTCTATTGTTGATGGAGCAGACAGGGCACTTGAACTGTAGTCAGCACGTCATTGACATCCCTGGGAGCATTGATTCTTCACCATCTACTTCACCTCATGATAGATATTTTAGTAGCATAGACACATCCGAGCATGGAGAAGGCCCCACAAGTGCAGGATTCCCTGTTTCTCAGCAATCAGTTCCTCTCTCTAGTGTATCCAATGGATCAAATTCCAGGAATTCTTCATCAATGAGGCAGGAGGAAACCCGTCGACTCAGGAACCCATTGAATTCTGGCTTTTGGATATCAATTGAGCTATTCCTCACTGTAAGCCAGATTGTCGCATCTATTATTGTTTTATCTTTGTCAAGGCATGAGCATCCAAGCACTCCACTGTTTGCATGGATCATTGGTTATGCCAGTGGTTATGTTGTTCTCCTTCCTCTACTCTATTGGCGGTATTATCATGGCAACCAGATTCAAGAGCAAGATTCATCTCATCTGGGTGAGACTTCTCAGATGAATGTTTCTTCAAGGACCTACCACTCTGTTGCTAGAACCAGTGGACAAGAGGATGATCAGGCTACTGCTGCATCATCCATAAGCAATCAAGGTTCAAGTTTGATGAATACAAGACTGAAGAAACTAATGGAGTACTTCAAAATGGCCTTGGATTGCTATTTTGCCGTGTGGTTTGTTGTTGGCATTGTATGGATCTATGGGGCACAATCGTCTGCTGATGAAGCTCCTAACTTGTATAGGTTAACTATAGTGTTTCTCATCTTCAGCTGTATCGGTTATGCTATGCCCTTCCTTGTATGTGCGACAATATGTTGTTGTCTACCTTGTATAATTTCCATAGTTGGTTTTAGAGAAGATCAGATACAAACCAGAGGGGCAACCACCGAATCCATTAATGCGTTGCCAACGTACAAGTTTAAAATGAAAAGTAAAATCAATTCTACTAACTCTGCTATTAGTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTCTCATCTCTGGAGAGGATGCGGCTTGCTGCATCTGCTTGACAATGTATGAAGACAACGATGAGTTGAGAGAATTGGCTTGTTCTCATCTTTTTCACAAAGACTGTGTGGACAAGTGGTTGAAGATAAATGCGTTATGCCCTCTTTGCAAGGGTGAGGTCGGTGAGGTCGAGGATGCAAGAGGATCATCAGGCTTCGTAGAAGATGCAGGCCAGCGAGTTGAAAATATATAG 1386 0.425 MKVAYFAASLFPSIQIKYHTVEIPEALEYYSFWHHSGAVSKELYLKGPSYTCLLLMEQTGHLNCSQHVIDIPGSIDSSPSTSPHDRYFSSIDTSEHGEGPTSAGFPVSQQSVPLSSVSNGSNSRNSSSMRQEETRRLRNPLNSGFWISIELFLTVSQIVASIIVLSLSRHEHPSTPLFAWIIGYASGYVVLLPLLYWRYYHGNQIQEQDSSHLGETSQMNVSSRTYHSVARTSGQEDDQATAASSISNQGSSLMNTRLKKLMEYFKMALDCYFAVWFVVGIVWIYGAQSSADEAPNLYRLTIVFLIFSCIGYAMPFLVCATICCCLPCIISIVGFREDQIQTRGATTESINALPTYKFKMKSKINSTNSAISEGGIVAAGTEKERLISGEDAACCICLTMYEDNDELRELACSHLFHKDCVDKWLKINALCPLCKGEVGEVEDARGSSGFVEDAGQRVENI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0958 461 ProSiteProfiles Zinc finger RING-type profile. 394 435 IPR001841 -
Prci2g0958 461 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 56 438 - -
Prci2g0958 461 SUPERFAMILY RING/U-box 385 441 - -
Prci2g0958 461 Pfam Ring finger domain 393 435 IPR001841 -
Prci2g0958 461 MobiDBLite consensus disorder prediction 103 128 - -
Prci2g0958 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Prci2g0958 461 MobiDBLite consensus disorder prediction 75 134 - -
Prci2g0958 461 SMART ring_2 394 434 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0958 Prci-Chr2 7092590 7101629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0958 124 444 C3H Transcription Factor Family AT1G80400 57.231 2.33e-137 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0958 - - pcin:129302441 895.575