Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0888 ATGGATGATTATTCTGGTAAACGAGCCGTAGATGGGGTGGTAGTACCTAAAAAGGGGATGGCTCATGTGCTTAGAGATAGTGCTAATGCTAGGGACCGTAATGGTCAGTTTTGCAGCCGACCTGGTTGCAGCAGCAGAGTGAATTCTTCTAAGGGTGCTCAAATTGGTTCATCTGAAAAAGGTAAATCTTCAAGGCCATCAATCCGACCTTCGAGTCGCAAGGAGGCAATTGGAAGTTCTTCTAGAGCATTACCAGGATCTTGCAACCTGGGAAAGTCCCTTACAGAGCCCCAGAAAACATTTTCTTCTCAGTCAGAGACTGTCCCATGTGAAACGAGTAGTTTACAGGATGGACCAGAAATTTCCGAGATCATCTCACCACCTGAAAAAATTCGCAGAGGGCCTCAAGCTGAAGTGGCAAGTTCAGAGTCCACTAATGTCGTATCAATGGAAGTAGGAAGCTCTAATGTAGCATCAAACACAACAAATAGGAGGAATCTTCGTCAAAAGCCTGGACTTAGTAGTCAAGAATTCAAAAGCTCTGGCTCAGCAACGCGCACTGGAGTCAGTAGGTATGGATTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGTTGTTCATCATCAGATTCAACCCCGCATAGGAGGAGAGATGTGATGAAAAAGAGAAATTGTGAAGGAGAAAGTAGTTCTGCTGCTAGAGGTAAGAAGATGAGTGGATCTTCATTGGAAGGACAAAGTTCTGGCTCCAGAAATGGTATATCTATATCTGATTCAAGAAGATCAAGAAACTTTCCTCCTCACAGGGATAACAGCAACGTTGCATTAGTTAGAACTAGGAGATCATTCAGTGGTCATGCTAGGGGAAGGCTTTCTAGCCAAGCAAATGAAAACCCTGCGCTACCCAATCAATCTCCTATCACTATATCATCTTTGCCTCATTCCAGTGACCTTAATGCTCCTGATTTATTACATCATACCTCGTTGGACACTCCCCTCAGAAGTCCAAGATCTTATAATAGACCAAGTAGTAGCAGTGAGCGGTTATTTGGTGTTTTGCCCTCATCTCCTTCAGAATATGGGATAACAAATTCTCTCATAAACCGGGACAGCTTTCGGCGCTACAACATGGATGGTATTGCAGAGGTATTATTGGCCCTGGAGAGGATTGAACAAGATGAAGATCTTACGCATGAGCAAATTCTTTTACTGGAGACCAACTTGTTCCTTAATGGACTAAACTTCTATGATCAACATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTGGCTTTGGAAGAGAGGATGGGTTCTGTAAGCACAGCTCTAACGGAGGAAGCACTCTCAGAGTGCCTAAAGAGAGCTTTCTATGAACTTGCCCCTTCAGATGATGCAGCCGAGAGCTGCGTTGCGGATAGGGATGACACCAAATGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGAGGAAGTGGGAAGTCTGCAATGCGAGCATAGATATCATGTGGGGTGCATACAGCAATGGCTGCGCCTGAAGAATTGGTGTCCTATTTGCAAAGCGTCTGCGGCACCATCACATTCATTTTCTTCAAGTTCAACGCCTTGA 1632 0.4449 MDDYSGKRAVDGVVVPKKGMAHVLRDSANARDRNGQFCSRPGCSSRVNSSKGAQIGSSEKGKSSRPSIRPSSRKEAIGSSSRALPGSCNLGKSLTEPQKTFSSQSETVPCETSSLQDGPEISEIISPPEKIRRGPQAEVASSESTNVVSMEVGSSNVASNTTNRRNLRQKPGLSSQEFKSSGSATRTGVSRYGLRNLRCNSISDVIPSGCSSSDSTPHRRRDVMKKRNCEGESSSAARGKKMSGSSLEGQSSGSRNGISISDSRRSRNFPPHRDNSNVALVRTRRSFSGHARGRLSSQANENPALPNQSPITISSLPHSSDLNAPDLLHHTSLDTPLRSPRSYNRPSSSSERLFGVLPSSPSEYGITNSLINRDSFRRYNMDGIAEVLLALERIEQDEDLTHEQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRAFYELAPSDDAAESCVADRDDTKCSICQEEYVEAEEVGSLQCEHRYHVGCIQQWLRLKNWCPICKASAAPSHSFSSSSTP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0888 543 ProSiteProfiles Zinc finger RING-type profile. 487 528 IPR001841 -
Prci2g0888 543 MobiDBLite consensus disorder prediction 205 356 - -
Prci2g0888 543 MobiDBLite consensus disorder prediction 138 189 - -
Prci2g0888 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 79 532 IPR045191 GO:0061630
Prci2g0888 543 MobiDBLite consensus disorder prediction 290 321 - -
Prci2g0888 543 MobiDBLite consensus disorder prediction 32 65 - -
Prci2g0888 543 MobiDBLite consensus disorder prediction 25 189 - -
Prci2g0888 543 MobiDBLite consensus disorder prediction 335 356 - -
Prci2g0888 543 Pfam Ring finger domain 486 528 IPR001841 -
Prci2g0888 543 MobiDBLite consensus disorder prediction 238 265 - -
Prci2g0888 543 SUPERFAMILY RING/U-box 481 533 - -
Prci2g0888 543 MobiDBLite consensus disorder prediction 73 120 - -
Prci2g0888 543 FunFam E3 ubiquitin-protein ligase arkadia 449 533 - -
Prci2g0888 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 533 IPR013083 -
Prci2g0888 543 MobiDBLite consensus disorder prediction 215 234 - -
Prci2g0888 543 SMART ring_2 487 527 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0888 Prci-Chr2 6618897 6623119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0888 384 531 C3H Transcription Factor Family AT2G15530 41.216 1.34e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0888 - - gmx:100819874 669.848