LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g0867	ATGACCCGTGTGTACGTTGGTAACTTGGATTCGAGAGTTACTGAGAGAGATCTTGAAGATGAATTTCGTGTATTTGGGGTTATACGGAGTGTCTGGGTCGCGCGGAGACCACCTGGTTATGCCTTTATTGATTTTGATGACCGCAGAGATGCGCAAGATGCCATTCGTGAATTAGACGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCTAAAGGGGGAGGTGGCCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGCGAATGTCATATGCGTGGTGGTTCAGGAAGACGACGTAGCCGCAGTCCACCTCGATACCGCAGGAGCCCTAGTTATGGGCGGAGGAGTTACAGTCCTCGTGGGGGTAGGTCCCCTAGCCCTAAGCGCCGCAGTTTGTCACCTCGTGGACGCAGCTATAGCAGATCACCTCCTTACCAAGGACGTGAGGATCTACCATGTACAAATGGAAATGGAGTAAGGGAACGGCACCGCAGTAGAAGCTGA	540	0.5167	MTRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSKGGGGRGRSGGSDLKCYECGEPGHFARECHMRGGSGRRRSRSPPRYRRSPSYGRRSYSPRGGRSPSPKRRSLSPRGRSYSRSPPYQGREDLPCTNGNGVRERHRSRS	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g0867	179	Gene3D	-	1	73	IPR012677	-
	Prci2g0867	179	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Prci2g0867	179	SUPERFAMILY	Retrovirus zinc finger-like domains	80	103	IPR036875	GO:0003676\|GO:0008270
	Prci2g0867	179	CDD	RRM_SRSF3_like	3	71	-	-
	Prci2g0867	179	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	158	-	-
	Prci2g0867	179	SMART	c2hcfinal6	87	103	IPR001878	GO:0003676\|GO:0008270
	Prci2g0867	179	Pfam	Zinc knuckle	87	101	IPR001878	GO:0003676\|GO:0008270
	Prci2g0867	179	ProSiteProfiles	Zinc finger CCHC-type profile.	87	101	IPR001878	GO:0003676\|GO:0008270
	Prci2g0867	179	FunFam	Serine/arginine-rich splicing factor 7	2	69	-	-
	Prci2g0867	179	SUPERFAMILY	RNA-binding domain, RBD	2	81	IPR035979	GO:0003676
	Prci2g0867	179	Gene3D	-	76	149	-	-
	Prci2g0867	179	MobiDBLite	consensus disorder prediction	99	179	-	-
	Prci2g0867	179	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Prci2g0867	179	FunFam	Serine/arginine-rich splicing factor RSZ22A	84	147	-	-
	Prci2g0867	179	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g0867	Prci-Chr2	6501336	6503835	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g0867	2	60	Eukaryotic Initiation Factors Gene Family	AT2G36660	39.683	5.21e-06	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g0867	K12896		-	gmx:100796961	235.728