Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0855 ATGCAACAGAGGTTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGGCTTGCTTCAGCAACATCAGATGTATCACCCTGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCGGGCTTTGACACCTCTACATGCTGCAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTGGCTGGGTGCAAGCTCATAAGGAAAGAAAAGTCCTCGTATGGTTTTGTGGATTACCATGATAGAGCATCTGCAGCTCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCAGCAGGATGCGCAAAATGCCATCAACGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACCAAGGGTGCTGGTATAAGTACCAGTGAGGAGAAGAACAATGACACTCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAATAATGAAGATGCTCCTGAAAACAGTCCTGCCTATACCACTGTTTATGTTGGCAACCTTCCCCATGATGCTATCTCTGAAGTCGATATATTATTTTGGAGCACTACTTGCTGTTTAGGTAACACAAAATGA 879 0.4323 MQQRFKLQQQQALMQQGLLQQHQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCCSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMTGKWLGNRQIRCNWGTKGAGISTSEEKNNDTQNAVVLTNGSSDGGQEYNNEDAPENSPAYTTVYVGNLPHDAISEVDILFWSTTCCLGNTK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0855 292 SUPERFAMILY RNA-binding domain, RBD 134 221 IPR035979 GO:0003676
Prci2g0855 292 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Prci2g0855 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Prci2g0855 292 SMART rrm2_1 141 214 IPR003954 GO:0003676
Prci2g0855 292 FunFam Nucleolysin TIAR-like protein 139 237 - -
Prci2g0855 292 FunFam Nucleolysin TIAR-like protein 1 138 - -
Prci2g0855 292 SMART rrm1_1 56 125 IPR000504 GO:0003723
Prci2g0855 292 SMART rrm1_1 141 214 IPR000504 GO:0003723
Prci2g0855 292 CDD RRM2_PUB1 139 218 - -
Prci2g0855 292 Gene3D - 1 136 IPR012677 -
Prci2g0855 292 Gene3D - 137 230 IPR012677 -
Prci2g0855 292 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 278 - -
Prci2g0855 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Prci2g0855 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Prci2g0855 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0855 Prci-Chr2 6447111 6453009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0855 107 225 Eukaryotic Initiation Factors Gene Family AT4G34110 31.405 1.29e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0855 K13201 - gmx:100777108 489.189