Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0854 ATGCAACAGAGGTTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGGCTTGCTTCAGCAACATCAGATGTATCACCCTGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCGGGCTTTGACACCTCTACATGCTGCAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTGGCTGGGTGCAAGCTCATAAGGAAAGAAAAGTCCTCGTATGGTTTTGTGGATTACCATGATAGAGCATCTGCAGCTCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCAGCAGGATGCGCAAAATGCCATCAACGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACCAAGGGTGCTGGTATAAGTACCAGTGAGGAGAAGAACAATGACACTCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAATAATGAAGATGCTCCTGAAAACAGTCCTGCCTATACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAAATGAACTCCACTATCAGTTCCATGCATTGGGGGCTGGAGTTATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTAAGATACAACACTCATGAAGAATCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAACAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCCGGAACAGCTTCGAACCCACTACCTCCTCCTGCACAACCATATCAAATCCTTCCCACAGCAGGGATGAACCAAGGCTATTCTCCTACTGAGTTATTGGCTTACCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTCGTGCATATGACTGGTCAACATGGCCTAGCTGCATCCTCCATTGGCTTAAGCTCTGGGGGGTCCCAAGCCATGTACGACGCATATTCTGGTAATTCTTCAAGGCAGCACCTTATGTACTATCGTTGA 1305 0.4521 MQQRFKLQQQQALMQQGLLQQHQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCCSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMTGKWLGNRQIRCNWGTKGAGISTSEEKNNDTQNAVVLTNGSSDGGQEYNNEDAPENSPAYTTVYVGNLPHDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEESELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAASSIGLSSGGSQAMYDAYSGNSSRQHLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0854 434 SMART rrm2_1 141 214 IPR003954 GO:0003676
Prci2g0854 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 339 - -
Prci2g0854 434 Gene3D - 139 218 IPR012677 -
Prci2g0854 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Prci2g0854 434 SUPERFAMILY RNA-binding domain, RBD 134 221 IPR035979 GO:0003676
Prci2g0854 434 Gene3D - 239 340 IPR012677 -
Prci2g0854 434 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Prci2g0854 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Prci2g0854 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Prci2g0854 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Prci2g0854 434 Gene3D - 1 138 IPR012677 -
Prci2g0854 434 SUPERFAMILY RNA-binding domain, RBD 250 345 IPR035979 GO:0003676
Prci2g0854 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Prci2g0854 434 CDD RRM2_PUB1 139 218 - -
Prci2g0854 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Prci2g0854 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Prci2g0854 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Prci2g0854 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Prci2g0854 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Prci2g0854 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Prci2g0854 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0854 Prci-Chr2 6445981 6453006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0854 56 371 Eukaryotic Initiation Factors Gene Family AT3G16380 25.526 8.01e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0854 K13201 - gmx:100777108 776.163