Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci2g0718 | ATGGGTACTGGTTGGAGAAGAGCCTTTTGTACTCGCGACCCTGAATCTACCATATCCGATAAGCACCACAGAGGCACGAGTCCCAGCCCCAGCCCAAGAAGCTGTGTTCGATTGGGTTTCCTCTCTGGCGGCAGCAACCCTTCTACTCCACGCTTGCAGCAGCAATCTCAAGCTGTGTCTAGTCCCAGCCCGCGTTGCCGAACGGTTTCAGAAGCAGCAAACGTGAGTGATAGCCCCAGATTTCAAAGCAAAAATACTCCCAGGGCAACCAAGTCCCCCAAGACCACTTCAATCTCAAATCCAACGTCTCCGCGGTCTCCTTTGAAGTTATCTCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGTTTGAATAGCGTAAAAACAGGTCAGGGAACGGCCATTTACACTGCAGAATGTACTCATGCCTTCCATTTTCCCTGTATCGCCGATTATGTACGCAAGCATGGAAGCCTCGTCTGCCCCGTCTGCAGCGCTGCCTGGAAAGACGTGCCTCTACTAGCCGCACACAAGAACCTCGCCTCAGAATCCGCCGAAAAGAAAGATATCGTGGTTGAGATGAAGAGCGTCGAAAAACCAAATGCCGCCGATAAGAGAAAAGAAAACTCGTCCCCAGTTTTCAGAACCAAGCTCGTTGAACCGCCCCAACAATTTCCGCAGAAACAGCCTAAGCAATCTGATTCGTACAGGTCCTACGACGACGATGAGCCACTTCTATCTCCCACCTCCGGTGGTCGAATCATTCCCATTCCTGAAGCCGACGAAAACGCCGAAGAAGACGCTGAAGAGTTCCAGGGATTTTTCGCCAATGCAAAATCCTCATCCTCAATCAACTCTTACTCTGGTGACTTGCAAACAAGCGACAAAGATTCCAGGAACGTTCAGGTGAAGTTGATTCCCGAGTGTGCCGTAGTCTCAGTCTCTCGAACCCACGAGACTTACGCTTTGGTTCTTAAAGTGAAAGCCCCTACACCACCACTTCCAGCGCGTGGCTGCAATAACAGTACGACGCCTCGTCTTGGCCGGTCGCAGCGAGCTCCCATAGATCTCGTAACGGTTCTTGACCTAGGTGGTAGCATGACAGGCGCGAAGCTGCACATGCTAAAGCGCGCCATGCGTTTGGTTATCTCATCACTCAGTCCAGCCGACAGGCTATCCATAGTGGCTTTCTCGGCCACATGCAAGCGGCTCCTACCCTTGAGAAGAATGACGGCCCAAGGACAGCGCGTGGCTAGGCGCATCGTCGATCGGCTTGTCTCTGGCCACGGGACTTGCGTGGGTGATGCCCTGAGAAAAGCCACCAAAGTGCTTGAGGACCGGAGGGAGAGAAACCCGGTTGCCAGTGTGATGCTCTTATCGGACGGCCAGGATGAACGGGTCCAAAGCGGCAACATCAACACCCAACGAAAATCCTCGAGCCACGTGTCCTCAACCCGATTCGCCCATATCGAGATTCCGGTTCATGCGTTCGGCTTCGGTAAAAAGAGCGGCTTCAGCCACGAGCCGGCCGAGGATGCATTTGCTAAGTGCGTCGGTGGGTTATTGAGTGTGGTGGTACAGGACTTGAGAATTCAGCTTGGCTTCCAATCGGGCTGCTCGGCGGCTGAAATAAGCGGTATCTATTTATGCGGCGGACGAACCACAGCACTGAGCTCCGGCTGCGTACGGCTCGGTGATTTATACGCCGAAGAAGAGAGGGAGTTACTCGTGGAGCTGAGAGTCCCGACGTCGGCCGTGGGGACCCACCATGTGATGACTGTACGGTTCTTGTATAAGGACCCCGCTTCTCAAGAGATCGTATCCAGCAGGGAGCAGGCCCTACTACTTCCGCCACCTCAGGGAACCCGAAGCGAACGCTTGAGGAATTTCTTCATTACGACTCGAGCCATAGCCGAGTCCCGCAGGCTCGCTGACCACAACGACTTCACGAGGGCCCATCATTTACTGGCTTCGACTCGAGCCCTTTTGATGCAGGCCAAATCGAGCTCGGCTGAGGAGCACGTACGTGCGGTAGAAGCTGAGCTGGCAGAGCTTCATTGGCGCGCTCAGAACCCCACGGAGCAGCCGATGATGGTGCAGGACCGTCGGAGAGGGTACGAGAGGGAGACGACGAGCTTGGTGGATGAAAATGGCGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCTGCTGAGAAGCTGGCCAAGGTAGCCATCATGAAGAAGTCATTGAACAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAG | 2283 | 0.5423 | MGTGWRRAFCTRDPESTISDKHHRGTSPSPSPRSCVRLGFLSGGSNPSTPRLQQQSQAVSSPSPRCRTVSEAANVSDSPRFQSKNTPRATKSPKTTSISNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECTHAFHFPCIADYVRKHGSLVCPVCSAAWKDVPLLAAHKNLASESAEKKDIVVEMKSVEKPNAADKRKENSSPVFRTKLVEPPQQFPQKQPKQSDSYRSYDDDEPLLSPTSGGRIIPIPEADENAEEDAEEFQGFFANAKSSSSINSYSGDLQTSDKDSRNVQVKLIPECAVVSVSRTHETYALVLKVKAPTPPLPARGCNNSTTPRLGRSQRAPIDLVTVLDLGGSMTGAKLHMLKRAMRLVISSLSPADRLSIVAFSATCKRLLPLRRMTAQGQRVARRIVDRLVSGHGTCVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQSGNINTQRKSSSHVSSTRFAHIEIPVHAFGFGKKSGFSHEPAEDAFAKCVGGLLSVVVQDLRIQLGFQSGCSAAEISGIYLCGGRTTALSSGCVRLGDLYAEEERELLVELRVPTSAVGTHHVMTVRFLYKDPASQEIVSSREQALLLPPPQGTRSERLRNFFITTRAIAESRRLADHNDFTRAHHLLASTRALLMQAKSSSAEEHVRAVEAELAELHWRAQNPTEQPMMVQDRRRGYERETTSLVDENGEPLTPTSAWRAAEKLAKVAIMKKSLNRVSDLHGFENARF | 760 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci2g0718 | 760 | Pfam | RING-like zinc finger | 123 | 152 | IPR001841 | - | |
Prci2g0718 | 760 | MobiDBLite | consensus disorder prediction | 202 | 216 | - | - | |
Prci2g0718 | 760 | ProSiteProfiles | Zinc finger RING-type profile. | 123 | 168 | IPR001841 | - | |
Prci2g0718 | 760 | FunFam | Probable E3 ubiquitin-protein ligase EDA40 | 359 | 524 | - | - | |
Prci2g0718 | 760 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 122 | 755 | - | - | |
Prci2g0718 | 760 | Pfam | von Willebrand factor type A domain | 360 | 466 | IPR002035 | - | |
Prci2g0718 | 760 | CDD | RING-H2_WAVH2 | 120 | 173 | - | - | |
Prci2g0718 | 760 | Gene3D | von Willebrand factor, type A domain | 359 | 527 | IPR036465 | - | |
Prci2g0718 | 760 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 178 | IPR013083 | - | |
Prci2g0718 | 760 | SMART | ring_2 | 123 | 167 | IPR001841 | - | |
Prci2g0718 | 760 | MobiDBLite | consensus disorder prediction | 202 | 259 | - | - | |
Prci2g0718 | 760 | SUPERFAMILY | RING/U-box | 117 | 173 | - | - | |
Prci2g0718 | 760 | SMART | VWA_4 | 357 | 542 | IPR002035 | - | |
Prci2g0718 | 760 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Prci2g0718 | 760 | ProSiteProfiles | VWFA domain profile. | 359 | 503 | IPR002035 | - | |
Prci2g0718 | 760 | MobiDBLite | consensus disorder prediction | 41 | 107 | - | - | |
Prci2g0718 | 760 | SUPERFAMILY | vWA-like | 357 | 533 | IPR036465 | - | |
Prci2g0718 | 760 | CDD | vWA_C3HC4_type | 358 | 529 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci2g0718 | Prci-Chr2 | 5391187 | 5394379 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci2g0718 | 123 | 173 | C3H Transcription Factor Family | AT1G74410 | 43.137 | 1.20e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci2g0718 | - | - | gmx:100782780 | 1044.26 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Prci2g0718 | 2 | 5391187 | 5394379 | Prci2g0718 | 2 | 5391187 | 5394379 | ECH |