Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0715 ATGGAGGTGTTTGAACATGATTTCTTGGAGGAGTTACTGGCTCTAAGAAGAGAAGCATGGGAGACGATTCCAAGTCCAAATGAAGAAAACCAACTCTTCTTGCCTGATGCTCATAATAGTTTGGACTGTTTTGATCCAAACTCTCTTGCTCTTCTCCCAAATTCTTTCTCTGATCAACAGGTGCCTCAAAGTTACAATTACTACAGTAGCTTCAACGAAATCTACAACTCATTACTTGATGAGTTCTCGACTCCCCAGATTATAGGTTCATCACCCTACACCACTCTTGATACCAATTCTTCACTTAGTACCCCTCCTTTTCTGGTTCAAGAAGAGCATAACCCTTTGTCATCCATGATGGAAGAGGAGGGCTTGTTTGGAGAAGAGCTTCAGAGCTTGGACCTCAAAACGACATGTAAGATGGAGCCGATCAGCCCTTCCCCTGTCGAAATGCCTGTCTTTGACACGGGCACTTGTACTTTGGAAAGAAAGAATCGACCCAAGAAACTTCTAGGACAGCCCTCCAAGAATCTAATGGCCGAGAGACGACGAAGAAAGAGGCTAAATGATCGTCTCTCCATGCTAAGATCTATTGTCCCAAAGATTAGCAAGATGGATAGGACATCTATACTTGGAGACACGATAGACTACATGAAAGAACTTCTGGACAAGATTAAAAATTTGCAGCAAGAAACAGACTTGGATTCAAATGTGGTGGGTGTTTTGAAAGATGCGAAACCAAATGAAATCATAGTGAGAAATTCACCGAAGTTTGATGTGGAGAGAAGGAATGCGGACACGAGGGTTGATATATGCTGTGCAGGGAAGCCAGGCTTGTTGCTATCTACAGTGAACACCCTGGAAGCTTTGGGGCTTGATATTCAGCAATGCGTTATCAGCTGCTTCAACGATTTTACGATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAGAGGACAATAATTGGTTCAGGAGACATAAAGCAAGCGTTATTTAGAAGCGCAGGATACGGAGGGAGATGCTTGTGA 1026 0.4357 MEVFEHDFLEELLALRREAWETIPSPNEENQLFLPDAHNSLDCFDPNSLALLPNSFSDQQVPQSYNYYSSFNEIYNSLLDEFSTPQIIGSSPYTTLDTNSSLSTPPFLVQEEHNPLSSMMEEEGLFGEELQSLDLKTTCKMEPISPSPVEMPVFDTGTCTLERKNRPKKLLGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKIKNLQQETDLDSNVVGVLKDAKPNEIIVRNSPKFDVERRNADTRVDICCAGKPGLLLSTVNTLEALGLDIQQCVISCFNDFTMQASCSEELEQRTIIGSGDIKQALFRSAGYGGRCL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0715 341 Gene3D - 172 236 IPR036638 GO:0046983
Prci2g0715 341 CDD ACT_UUR-ACR-like 267 308 - -
Prci2g0715 341 Pfam Helix-loop-helix DNA-binding domain 178 221 IPR011598 GO:0046983
Prci2g0715 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Prci2g0715 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 234 IPR036638 GO:0046983
Prci2g0715 341 Coils Coil 211 231 - -
Prci2g0715 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 335 - -
Prci2g0715 341 SMART finulus 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0715 Prci-Chr2 5352833 5354520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0715 99 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.466 2.82e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g0715 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0715 - - gmx:100814388 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0715 2 5352833 5354520 Prci2g0715 2 5352833 5354520 ECH