Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0698 ATGGGGAGAGGGAAGATCGTGATTAGGAGAATCGACAATTCGACGAGCAGGCAGGTAACTTTCTCCAAACGAAGAAACGGTCTGCTGAAGAAGGCGAAGGAACTTGCAATCCTATGCGATGCTGAGGTAGGAGTCATGATCTTCTCGAGCACTGGCAAGCTCTACGACTTCGCCAGCACAAGCATGAAATCAGTAATAGAACGATACGGCAAAGCTAAGGAGGAACATCATCAACTTGGAGGTTCAACCTCTGAAGTAAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGGCAACAGTTGCAGAACTTGCAAGAGAGTCACCGGCAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGAATTACAGAGTTTAGAAAGCCAGTTGGAAATTAGCCTTCGAGGTGTCCGTCTAAAAAAGGATCAACTTTTAATGGATGAAATACAGGAAATAAACCGAAAGGGAAACCTCTTGCGTCAAGAAAATGTGGAATTGCACAAGAAGGTCTATGGAATAAGAGATGGAAATGGAGCAAACAGAAATTCTATTCTCACGGATGGCCTAGGCATAGGGGAGAATTCGCATGTGCCAGTGAATCTCCAGCTTAGCCAACCTCATCAGCAAAACCATGAGTCGCCTTCAGGAGCCACAAAGTTAGGCAGATTGCAACTGCACTGA 681 0.4508 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSVIERYGKAKEEHHQLGGSTSEVKFWQREAAMLRQQLQNLQESHRQIMGEELSGLTVKELQSLESQLEISLRGVRLKKDQLLMDEIQEINRKGNLLRQENVELHKKVYGIRDGNGANRNSILTDGLGIGENSHVPVNLQLSQPHQQNHESPSGATKLGRLQLH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0698 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci2g0698 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Prci2g0698 226 MobiDBLite consensus disorder prediction 205 226 - -
Prci2g0698 226 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci2g0698 226 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Prci2g0698 226 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Prci2g0698 226 Coils Coil 86 113 - -
Prci2g0698 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Prci2g0698 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci2g0698 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0698 Prci-Chr2 5270465 5280348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0698 1 219 MADS-box Gene Family AT4G37940 60.909 1.44e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci2g0698 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0698 K09264 - pop:7461842 366.696