Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0660 ATGGCGAGAGAGAAGATCAAGATCAAGAAAATTGACAACGTGACGGCGAGGCAGGTGACTTTCTCTAAGAGAAGACGAGGGCTCTTCAAGAAAGCCTCGGAGCTTGCGGTTCTATGTGATGCTGAGGTTGGTCTCATTGTCTTCTCATCCACCGGCAAGCTCTTCGAATTCTGCAACTCCAGCACGAAGGACATGATTACAAGGTATAATCAGTACTCTCATGCCATCAACCAACAAGACAGACCTTCTCTAGAACTGCAGCTAGAGAATGGCAATAACTGCAAATTGAGTAAAGAAGTCGCCGAAAGAACGCAGCAGCTAAGGCGCATGAAAGGCGAAGATCTTCAAGGACTCAACCTACAAGAGTTGCAGCAACTGGAGAAACTCCTGGAAAAAGGACTCGGCCGCGTCATTGATGCGAAGGAAAATCGGCTCATGAGCGAGATCACCGCGCTTCAGAAAAAGGGAATGGAATTGGAAGAAGAGAACAAGAAGCTGAAGCAGAAGACGGGGATGCTGTGTAGAGGAATAACGCAAGTGCCGGCGGTGGAGTCATCAGATATTGGGATTCAAGAGGAAGGCATCTCATCTGATTCAATGACCAACGTTTACAGCTGCAGCAGTGGCCCTCCTCTTGACGACGATTCTTCGGATACTTCGCTCAAGTTAGGGTTGCCCTACTCAAGCTGCAATGGAAAGCTGTGA 705 0.4837 MAREKIKIKKIDNVTARQVTFSKRRRGLFKKASELAVLCDAEVGLIVFSSTGKLFEFCNSSTKDMITRYNQYSHAINQQDRPSLELQLENGNNCKLSKEVAERTQQLRRMKGEDLQGLNLQELQQLEKLLEKGLGRVIDAKENRLMSEITALQKKGMELEEENKKLKQKTGMLCRGITQVPAVESSDIGIQEEGISSDSMTNVYSCSSGPPLDDDSSDTSLKLGLPYSSCNGKL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0660 234 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Prci2g0660 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Prci2g0660 234 Coils Coil 123 169 - -
Prci2g0660 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Prci2g0660 234 Pfam K-box region 95 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci2g0660 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci2g0660 234 FunFam Transcription factor, MADS-box 13 83 - -
Prci2g0660 234 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci2g0660 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci2g0660 234 MobiDBLite consensus disorder prediction 201 221 - -
Prci2g0660 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0660 Prci-Chr2 4865024 4872470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0660 1 227 MADS-box Gene Family AT2G22540 57.741 5.15e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci2g0660 K-box 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0660 - - tcc:18591803 255.373