Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0658 ATGGCGAGAGAGAAGATCAAGATCAAGAAAATTGACAACGTGACGGCGAGGCAGGTGACTTTCTCTAAGAGAAGACGAGGGCTCTTCAAGAAAGCCTCGGAGCTTGCGGTTCTATGTGATGCTGAGGTTGGTCTCATTGTCTTCTCATCCACCGGCAAGCTCTTCGAATTCTGCAACTCCAGAGACTTAATGTGCTTAAAGTCGTTTGCTGGTTCAAAAAAGAAAAAAAGCACGAAGGACATGATTACAAGGTATAATCAGTACTCTCATGCCATCAACCAACAAGACAGACCTTCTCTAGAACTGCAGCTAGAGAATGGCAATAACTGCAAATTGAGTAAAGAAGTCGCCGAAAGAACGCAGCAGCTAAGGCGCATGAAAGGCGAAGATCTTCAAGGACTCAACCTACAAGAGTTGCAGCAACTGGAGAAACTCCTGGAAAAAGGACTCGGCCGCGTCATTGATGCGAAGGAAAATCGGCTCATGAGCGAGATCACCGCGCTTCAGAAAAAGGGAATGGAATTGGAAGAAGAGAACAAGAAGCTGAAGCAGAAGACGGGGATGCTGTGTAGAGGAATAACGCAAGTGCCGGCGGTGGAGTCATCAGATATTGGGATTCAAGAGGAAGGCATCTCATCTGATTCAATGACCAACGTTTACAGCTGCAGCAGTGGCCCTCCTCTTGACGACGATTCTTCGGATACTTCGCTCAAGTTAGGGTTGCCCTACTCAAGCTGCAATGGAAAGCTGTGA 753 0.4728 MAREKIKIKKIDNVTARQVTFSKRRRGLFKKASELAVLCDAEVGLIVFSSTGKLFEFCNSRDLMCLKSFAGSKKKKSTKDMITRYNQYSHAINQQDRPSLELQLENGNNCKLSKEVAERTQQLRRMKGEDLQGLNLQELQQLEKLLEKGLGRVIDAKENRLMSEITALQKKGMELEEENKKLKQKTGMLCRGITQVPAVESSDIGIQEEGISSDSMTNVYSCSSGPPLDDDSSDTSLKLGLPYSSCNGKL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0658 250 CDD MADS_MEF2_like 2 91 IPR033896 GO:0000977|GO:0045944
Prci2g0658 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 Pfam K-box region 111 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci2g0658 250 Coils Coil 139 185 - -
Prci2g0658 250 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci2g0658 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 Gene3D - 14 108 IPR036879 GO:0003677|GO:0046983
Prci2g0658 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Prci2g0658 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci2g0658 250 MobiDBLite consensus disorder prediction 216 238 - -
Prci2g0658 250 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0658 Prci-Chr2 4864825 4872470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0658 1 243 MADS-box Gene Family AT2G22540 54.118 1.22e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci2g0658 K-box 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0658 - - pvy:116141471 247.669