Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0653 ATGGGTGGTGCGCCTTCTTGCAACCCATTCACCACATTTTTCTTATTCTTCTTCGTCCTCCACGCCACAATCATACTCCTTGCAGGGTCTGCTGCTGCTGCTGCAGAAACCCCGTCTTCAGCTTTGACCGTTGATGACGAAGGCGAGGGAAAATCTCCTCCTCCTCCGCCGCCATTGGAAAGTCGCCGTGGTGGAGGAGGGAGGGGGTCTCCGTTTAAGCCGAGCGTGGTCGTTCTAGTGGGGGTGATGACCACCTTGTTTTTTCTTACCTTTCTTCTTCTTCTCTATGTTAAACACTGCAAGCCCGAGGAGGAACCCCTGAGGAATTCACATACAAGCGCTGCCTATTCAGGGAGGAAGAACTCCGGCATTGACAGGGCGGTGATCGAGTCATTACCCATTTTCAGATTCGGATCGTTGAGGGGCCAAAAAGATGGGCTCGAATGCGCCGTTTGTCTGACCCGGTATGAGTCCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCTTTCCATGTCGAATGCGTGGATACATGGCTGGACGCACATTCCACTTGTCCGCTCTGCCGGTACCGGGTCGACCCAGAAGACATTCTCCTGGTGGGGGAGGCGAAAGTTTGGCCGCAGAATCAACCCATTCCACCGATACAAGAGATCTCTGAAAGTCCGGAGCATTGTGCAGACAATGACATAGAGAGCGGCCTGGGACTGGATTCACAGAATCGGCTCGATTCAAACTCGATTCTCAGACGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAGGAGGAGGAGGGGGCAATAGTGGGTTCTTTAAGATTATATTGCAGCATCGAATCAGCGTGGATGGTGAAGCGTCGACGACGCCGCAGTATAAGAAAACGGCACCGTTTAGGATGTCGCTGGACAGTGCAATGTCGACAAAGAGAAAGAGGAACGAGGCCGGTAAAGAAAGACAAGGTAGTGAGTGTGATGGCCCGAGAAAAGACGGATTACTTCTGACAGAAAAGGAGAAGCAGCACAGGTTGGAACACAGGATCATAGTGTCTCCGTCTCAAAAGCCCAACGTGCTTCATCAGAGGTGGAGCGACGTACATCCGTCGGACTTACTATACCTAACGTCGGAGAGGATACTGAGCGAGGAAGGCCACAGACCATCGTGTTCCTCCTCAGGGCCGTCGCTGTCGCGGCGGCGACAGCAACAGGATAGGCAGCCGCCGATGTGGCGGAGCATGGGAGAGAACAGTATGAGAAGCGCGTCGGAAATCACGGGTCTGAGCAGGCAGGGGAGAGAGGAAGGGGAGCAACGGCGGGCAGAAGAAGAAGAGAGACAGGTGGGAGTAGTATCGAGATGGTTAGCGTGGATCTCTCAGTCGCAACGATCTGTACGGTAG 1398 0.5393 MGGAPSCNPFTTFFLFFFVLHATIILLAGSAAAAAETPSSALTVDDEGEGKSPPPPPPLESRRGGGGRGSPFKPSVVVLVGVMTTLFFLTFLLLLYVKHCKPEEEPLRNSHTSAAYSGRKNSGIDRAVIESLPIFRFGSLRGQKDGLECAVCLTRYESVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEAKVWPQNQPIPPIQEISESPEHCADNDIESGLGLDSQNRLDSNSILRRVSGRHSSVGERGGGGGNSGFFKIILQHRISVDGEASTTPQYKKTAPFRMSLDSAMSTKRKRNEAGKERQGSECDGPRKDGLLLTEKEKQHRLEHRIIVSPSQKPNVLHQRWSDVHPSDLLYLTSERILSEEGHRPSCSSSGPSLSRRRQQQDRQPPMWRSMGENSMRSASEITGLSRQGREEGEQRRAEEEERQVGVVSRWLAWISQSQRSVR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0653 465 SMART ring_2 149 190 IPR001841 -
Prci2g0653 465 Pfam Ring finger domain 148 191 IPR001841 -
Prci2g0653 465 MobiDBLite consensus disorder prediction 385 427 - -
Prci2g0653 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Prci2g0653 465 MobiDBLite consensus disorder prediction 39 68 - -
Prci2g0653 465 MobiDBLite consensus disorder prediction 306 331 - -
Prci2g0653 465 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Prci2g0653 465 CDD RING-H2_EL5-like 148 191 - -
Prci2g0653 465 FunFam RING-H2 finger protein ATL43 124 198 - -
Prci2g0653 465 SUPERFAMILY RING/U-box 128 196 - -
Prci2g0653 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 43 459 - -
Prci2g0653 465 MobiDBLite consensus disorder prediction 429 448 - -
Prci2g0653 465 MobiDBLite consensus disorder prediction 382 448 - -
Prci2g0653 465 MobiDBLite consensus disorder prediction 286 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0653 Prci-Chr2 4822742 4824471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0653 70 456 C3H Transcription Factor Family AT5G05810 43.198 3.61e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0653 K19041 - vvi:100259882 291.582