Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0652 ATGCTTCCTTTCAGGAGTTTCTATGGGTTCGAGAGCTGGTCAGATCAGCCAGGCTCGTCCGTCAAGTCCGTGGAATTGGATAACGGGAAAACAGTTCTGAACTCCACTTCAAAATCTGATCAGAGGAAATCCATGGAAGCATGCAAGAGCCATAGAGAAGCTGAGAGGAGACGCAGGCAACGTATCAACGCCCACCTCTCCACCCTGCGCTCTCTCCTCCCTAACGCCGTAAAGTCGGATAAGGCTTCGTTGTTAGCGGAGGTGGTCCAACATGTCAGAGACCTGAGGAAACAGGCCGATGACGCGGCGCGCCATCACAACGGAGACTTGTCGGGCAGCACTATCGGCGGGGAATCCGGGTCGGGTCCGGGAGACTCGGAGCAGTGGGCGTTTCCGGGAGAGTTGGACGAAGCATCTGTGAGCTATTGCGATGGAGCTGGGGAGAGGAAGCTGGTGAAAGCCACTCTCTGCTGCGAGGACCGGCCCAACCTGAACAGAGATCTAGAGGAGGCGATCCGGTCGGTTCGGGCCAAGGCGGTGCGAGCCGAGATGATGACCATTGGTGGGCGAACCAAGAGCGTGGTGATAGTGCAGTGGACTGGCGGAGAAGAGGCTGGAGCCCTGGAACGGGCTTTGACGGCTGTGGTAGAAAATCGGGCCCCCATGGGCCCAAGACTGGGCCGAATGTCTCTGGGCCACAAACGGGCTCGACTTTGTTATGGTTTACCAAATGACGGGGAAAGCGGCTTCTTGATGGGAACTGCTAACATGTGA 774 0.5711 MLPFRSFYGFESWSDQPGSSVKSVELDNGKTVLNSTSKSDQRKSMEACKSHREAERRRRQRINAHLSTLRSLLPNAVKSDKASLLAEVVQHVRDLRKQADDAARHHNGDLSGSTIGGESGSGPGDSEQWAFPGELDEASVSYCDGAGERKLVKATLCCEDRPNLNRDLEEAIRSVRAKAVRAEMMTIGGRTKSVVIVQWTGGEEAGALERALTAVVENRAPMGPRLGRMSLGHKRARLCYGLPNDGESGFLMGTANM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0652 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Prci2g0652 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 103 IPR036638 GO:0046983
Prci2g0652 257 PANTHER TRANSCRIPTION FACTOR BHLH30 30 239 IPR045847 GO:0003700|GO:0006355
Prci2g0652 257 Gene3D - 39 107 IPR036638 GO:0046983
Prci2g0652 257 Pfam Helix-loop-helix DNA-binding domain 48 95 IPR011598 GO:0046983
Prci2g0652 257 MobiDBLite consensus disorder prediction 42 57 - -
Prci2g0652 257 MobiDBLite consensus disorder prediction 100 131 - -
Prci2g0652 257 Coils Coil 165 185 - -
Prci2g0652 257 SMART finulus 52 101 IPR011598 GO:0046983
Prci2g0652 257 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0652 Prci-Chr2 4814453 4816121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0652 41 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 40.984 1.41e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g0652 HLH 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0652 - - qsa:O6P43_015382 256.144