Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0617 ATGGAATTTGAGGAGCACGAAGAGCAGGAGGACGACATCGAGATCCCCGTGTCGCCTCCTGCTTACAACTCCCTGGCCAACAACTCTGTCGCCAGGTCCAAAGTAGGCGTCTCCGGAGGAGAGGGCGGTGCCTCCGCCGTCACGACTGGCCTTAAAGCTGAGCCGGCGGCGGCGGCCAGGTACCGAGAATGCCAAAAGAACCACGCCGTAAGCCTCGGTGCACACGCTGTCGATGGCTGCGGAGAGTTCATCGCCGCGGGAGAGGAAGGCACGCTCGACGCCCTAAAATGCGCCGCCTGTAACTGCCACCGCAATTTCCACCGTAAGGAGATGGACGGTGGGGACTTGACCCAGTATCAGCCGCCGCCGCCGCCGCCGTACTACCAGTACCACCAGCAGTACCCACCGTACCATCGGGCGCCTCCGCCAGCTGCTGGGTACCTCCACCACCACCTGACGGCTCAGCCGATGGCGCTGCAGCGGTCGTTGGCCCTGCCGGCTCCGGCTCCGATTAGAGATGAGGAGGACATGTCGAATCCGAGCAGCAGCGGAGGCGGGGGAGGGAAGAAAAGGCACAGGACGAAGTTCACGCAGGAGCAGAAAGAGAAGATGCTGGCATTCGCGGAGCGTGTTGGGTGGAGGATCCAGAAGCACGATGAAGGTGCGGTGGAGCAATTCTGTGCGGAGACTTGTGTCAAGAGACATGTGCTTAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 759 0.6047 MEFEEHEEQEDDIEIPVSPPAYNSLANNSVARSKVGVSGGEGGASAVTTGLKAEPAAAARYRECQKNHAVSLGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKEMDGGDLTQYQPPPPPPYYQYHQQYPPYHRAPPPAAGYLHHHLTAQPMALQRSLALPAPAPIRDEEDMSNPSSSGGGGGKKRHRTKFTQEQKEKMLAFAERVGWRIQKHDEGAVEQFCAETCVKRHVLKVWMHNNKNTLGKKP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0617 252 MobiDBLite consensus disorder prediction 1 21 - -
Prci2g0617 252 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Prci2g0617 252 SUPERFAMILY Homeodomain-like 179 250 IPR009057 -
Prci2g0617 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 248 - -
Prci2g0617 252 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Prci2g0617 252 Gene3D - 174 249 - -
Prci2g0617 252 MobiDBLite consensus disorder prediction 170 197 - -
Prci2g0617 252 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Prci2g0617 252 FunFam Zinc-finger homeodomain protein 2 176 250 - -
Prci2g0617 252 NCBIfam homeobox domain, ZF-HD class 189 246 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0617 Prci-Chr2 4523482 4525328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0617 7 248 ZF-HD Transcription Factor Family AT4G24660 53.659 1.29e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci2g0617 ZF-HD_dimer 9.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0617 - - pcin:129294191 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0617 2 4523482 4525328 Prci15g0645 15 4221168 4222861 CCT
Prci2g0617 2 4523482 4525328 Prci2g0617 2 4523482 4525328 ECH