Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci2g0595 | ATGGCACTTGAGGCTGTGGTTTTCCCACAAGATGCATTCAACTATAGCTATATGTTTGGACTTGGCCATGGCTTAGAAGCAGAACATCAGCAACGTTTTGTTGGGATCACAGGCAATGCGAATTGGGATTACTCTTCGGTGTTGCGAGACGTGAAGGATTCATGGGACAGCTCTAACTCGTCTCCTCGAGAATCTCTGTCTCCTGCGGCTTCCACAGGACGCCGAAAACGACGCCGCACCAAGACCGCCAAGAACCAGGAGGAAATCGAGAGCCAGAGGATGACCCACATTGCCGTGGAGCGAAATCGCCGCAAGCAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTCCTTCTTATGTCCAAAGGGGTGACCAGGCCTCTATAATTGGAGGCGCCATTAACTTCGTCAAGGAGCTGGAACAACATCTACAGTCGATGCAGGGCCAGACTAAGAGAAAGCCACGCACTGAACAAAGCCCCTTTCCCGAGTTCTTCACGTTCCCACAGTACACGACACCTGCAACTCAGAGCATCACCGGCTGTACGGCCCCGAACGACGTCGTGATGGGACAAAACCAGAAGGAGGCCGGGGCCGCCGATATAGAAGTGAGCTTGGTGGACAGCCACGCCAACCTCAAGATACTCTCCAAGAAACGGCAGGGCCAGCTCGTGAAGATGGTTGTTGGGCTTCAGAGTCTCAGACTCTGCGTTCTTCACCTTAACGTCACCACAACTCTCGACGATACGGTTCTGTACTCCGTTAGCGTAAAGGTTGAGGATGAGAGTCAGTTGAACACAGTAGATGAAATTGCAGCCGTTGTGAATCAACTAATGCGCAGGATTCAAGAAGAAGCTGCTTTCTGTTGA | 876 | 0.5194 | MALEAVVFPQDAFNYSYMFGLGHGLEAEHQQRFVGITGNANWDYSSVLRDVKDSWDSSNSSPRESLSPAASTGRRKRRRTKTAKNQEEIESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQHLQSMQGQTKRKPRTEQSPFPEFFTFPQYTTPATQSITGCTAPNDVVMGQNQKEAGAADIEVSLVDSHANLKILSKKRQGQLVKMVVGLQSLRLCVLHLNVTTTLDDTVLYSVSVKVEDESQLNTVDEIAAVVNQLMRRIQEEAAFC | 291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci2g0595 | 291 | PANTHER | MAX DIMERIZATION, MAD | 57 | 288 | - | - | |
| Prci2g0595 | 291 | MobiDBLite | consensus disorder prediction | 53 | 68 | - | - | |
| Prci2g0595 | 291 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 91 | 142 | IPR011598 | GO:0046983 | |
| Prci2g0595 | 291 | CDD | bHLH_AtFAMA_like | 94 | 166 | - | - | |
| Prci2g0595 | 291 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 143 | IPR011598 | GO:0046983 | |
| Prci2g0595 | 291 | Gene3D | - | 76 | 158 | IPR036638 | GO:0046983 | |
| Prci2g0595 | 291 | SMART | finulus | 97 | 148 | IPR011598 | GO:0046983 | |
| Prci2g0595 | 291 | MobiDBLite | consensus disorder prediction | 53 | 91 | - | - | |
| Prci2g0595 | 291 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 91 | 164 | IPR036638 | GO:0046983 | |
| Prci2g0595 | 291 | FunFam | Basic helix-loop-helix transcription factor | 82 | 157 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci2g0595 | Prci-Chr2 | 4341082 | 4342570 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci2g0595 | 1 | 261 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G72210 | 48.544 | 5.80e-75 | 230 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Prci2g0595 | HLH | 5.8e-10 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci2g0595 | - | - | gmx:100797856 | 306.219 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Prci2g0595 | 2 | 4341082 | 4342570 | Prci15g0634 | 15 | 4116152 | 4117824 | CCT | |
| Prci2g0595 | 2 | 4341082 | 4342570 | Prci2g0595 | 2 | 4341082 | 4342570 | ECH |