Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0594 ATGGCGAGGATACGCAGGAAACTCTTCCCGGCACTGTCTGATATAAACCAAACCCAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTATAGCTGCTATTCTTTCCCAGACTACTACTTCCCACCACCTCCACCTCCTCCACCTCCTTTTTCGGCCACTGATCATTCCAGTTCAGGTACTCACATCTCCTCCAATTTCATCATTCTTGCTTCTCTGTTCACTGTCATTTTTATTCTCCTGGGTTTGTACGTGATCAAAGCCAAGTGCTTTGCTAATTGGTGTGGCCGGAGAGACAATGGATCCCAGTCAGAGGTCTCAGACCAAGAGTTTCTTGATGAGAACCATGTTGATCACCCTGTCTGGTTTATCACCAGTGCTGGTCTGCAACAGTCGATTATAAATTCTATCACGGTTTGTAAGTATAGAAGAGGTGATGGGTTGATCGAAGGAACCGAGTGTTCAGTGTGTTTGAACGAGTTTCGCGAAGGTGAAACCTTGCGACTCTTGCCTAAGTGCAGCCACGCCTTTCACATCCCCTGTATTGACACTTGGTTGCGTTCGCATACTAATTGTCCTCTCTGTCGTGCTGGGATCGTCTCGAACAATGTCAGACCTGAGGCTGCCGTGTCGAATTGGGCTTCAACGGAGCTAAACTCTGAAAATTCACAAAGGAACCAAGAGATTCAAGCTGAGAATCCGCCAAATGATGGTGAATTAAACGACAATATGATGGTAGTTGTAAATGGGGCACCTGGAAACAGAGCTGGAACTGTGGAAACCCAAGACTTGAACGATAATTTGGTTTCAAAGGAGCACGCAAATGTTGCACGCAACGGTCCAAAAGACGATCATGGGGTTTTAAATGAAGGCAATCGAATTGAGATAAGGTCTATGTCCATGGATTATAGGCCGGCAAATTCTTCTAGTTGGGAGCCTGAAGAAAACCATGCAGGGCTTGAAGAAATTCGGCGTTCCTCTGTTACAAAATGTCTACACCTGAGCCCTATTCCTATGAAGAGGTCGTTCTCTTGCAGCGGAAGGATTCTATCTGCCAGAGATCACAGGAATCTACATATAAGTCTTTCTTATTAG 1095 0.4575 MARIRRKLFPALSDINQTQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPFSATDHSSSGTHISSNFIILASLFTVIFILLGLYVIKAKCFANWCGRRDNGSQSEVSDQEFLDENHVDHPVWFITSAGLQQSIINSITVCKYRRGDGLIEGTECSVCLNEFREGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVRPEAAVSNWASTELNSENSQRNQEIQAENPPNDGELNDNMMVVVNGAPGNRAGTVETQDLNDNLVSKEHANVARNGPKDDHGVLNEGNRIEIRSMSMDYRPANSSSWEPEENHAGLEEIRRSSVTKCLHLSPIPMKRSFSCSGRILSARDHRNLHISLSY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0594 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Prci2g0594 364 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Prci2g0594 364 MobiDBLite consensus disorder prediction 216 237 - -
Prci2g0594 364 PANTHER RING-H2 FINGER PROTEIN ATL16 49 345 IPR044600 GO:0016567|GO:0016740
Prci2g0594 364 MobiDBLite consensus disorder prediction 216 241 - -
Prci2g0594 364 SUPERFAMILY RING/U-box 148 201 - -
Prci2g0594 364 CDD RING-H2_EL5-like 153 196 - -
Prci2g0594 364 SMART ring_2 154 195 IPR001841 -
Prci2g0594 364 Pfam Ring finger domain 153 196 IPR001841 -
Prci2g0594 364 FunFam RING-H2 finger protein ATL54 129 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0594 Prci-Chr2 4335228 4336777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0594 1 200 C3H Transcription Factor Family AT1G72220 51.101 4.11e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0594 - - aprc:113847030 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0594 2 4335228 4336777 Prci2g0594 2 4335228 4336777 ECH