Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0561 ATGGGAAGATCCCCCTGCTGCGATGAGAATGGCCTCAAGAAAGGACCCTGGACTCCTGAGGAAGATGAGAAGCTTGTTCAGTACATTCAGAAACACGGCCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCTGGTCTGAATAGATGTGGGAAAAGCTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGACATCAAGAGGGGCAATTTTTCTCAAGAAGAAGAGCAAACCATACTGCGTCTCCATTCCATCCTTGGGAACAAATGGTCGGCAATTGCATCCCATCTTCCTGGCAGGACTGATAACGAGATCAAGAATTTCTGGAACACGCATCTAAAGAAGAAGTTAATTCAGATGGGTTTTGATCCAATGACCCACCAGCCACGAACAGATCTTGTTTCCACCTTGCCGTATCTGCTGGCTCTGGTCAACATGACAGACCTCATGGATCACCATCCTCAAGCTTGGGATGATCAGGCTGTGAAACTACAAGCCGAGGCAGTTCAGTTGGCAAAGCTTCAATATTTAAACTCTTTACTCCAATCCACGACTTCCTTGAACACTACCAACTCCTATGACCAAAATGGCATCATCACGAACATGGAAGCTATCAACTTGCTCAATTCAATGTCTAATTTGAAAGAGAACCCAGATATGAACTACCCACAGTTGAATATTAATCCAGGCTCATTTTCTCATGGGATAGATAGCTCCCAACCACTCCACCACCCAACCATGTTATCTCACATGTCAGACCCACCACAAGTCCCTTTCAGCTCGCAATCATGTTTGAACAGTAGTGAGAAGGGTCAAGGTGCAAACTTTACAATGATTAGTCAAGGGGATCATACGACGCCTGATCATGAATCTTCATCAATGTTGCCATCTATGCCCCCTCTGGCTGGAGATGCCACCAGTAGCTCTTCTAGCTATGGAGGAATTTCCTCGTCTTATTGGACTGAATTATTTTTCGAGGACCCCATTATGCATGAGTTATCTTAG 1002 0.4541 MGRSPCCDENGLKKGPWTPEEDEKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSQEEEQTILRLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALVNMTDLMDHHPQAWDDQAVKLQAEAVQLAKLQYLNSLLQSTTSLNTTNSYDQNGIITNMEAINLLNSMSNLKENPDMNYPQLNINPGSFSHGIDSSQPLHHPTMLSHMSDPPQVPFSSQSCLNSSEKGQGANFTMISQGDHTTPDHESSSMLPSMPPLAGDATSSSSSYGGISSSYWTELFFEDPIMHELS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0561 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci2g0561 333 CDD SANT 69 112 IPR001005 -
Prci2g0561 333 MobiDBLite consensus disorder prediction 277 305 - -
Prci2g0561 333 CDD SANT 16 61 IPR001005 -
Prci2g0561 333 Gene3D - 13 66 - -
Prci2g0561 333 Gene3D - 69 116 - -
Prci2g0561 333 FunFam MYB-related transcription factor 13 66 - -
Prci2g0561 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Prci2g0561 333 FunFam Transcription factor MYB39 69 130 - -
Prci2g0561 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci2g0561 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci2g0561 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci2g0561 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci2g0561 333 SMART sant 13 63 IPR001005 -
Prci2g0561 333 SMART sant 66 114 IPR001005 -
Prci2g0561 333 MobiDBLite consensus disorder prediction 277 292 - -
Prci2g0561 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci2g0561 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0561 Prci-Chr2 4088816 4090335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0561 1 333 MYB Transcription Factor Family AT1G34670 53.908 9.11e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g0561 Myb_DNA-binding 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0561 K09422 - gmx:100782792 483.026