Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0517 ATGGGTCGTGTCAAATTGGAGATTAAGAGAATAGAGAACACCATAAATCGTCAGGTCACATTCTCCAAGCGCAGAAATGGCCTCATCAAGAAAGCCTACGAGCTGTCCATTCTCTGCGACATTGATATTGCTCTCATCATGTTCTCTCCTTCAGGCCGTGTCAGTCACTTTTCCGGCAGAAGAAGAATTGAAGATGTATTCACACATTACATCAATCTACCAGATCAAGAAAGAGATGGCGCTATAACCTTTCCAGAGCAACCGTACCGCAGGAATATTCAGGACAAAGAGTATCTGTTGAGGACCCTTCAACAACTGAAGAGCGAAAATGACATAGCTCTTCAGCTGGCCAAGTTCGTTCCATCTCCTCTTCTCACCAACAATCCCGGAGACATCAACTCGGAGATTGAAGAGCTTCAACAAGAAGTGAACAGGTTGCAGCAACAGCTTCAAATGGCGGAAGAACAGATACGGATATACGAGCCGGAGCCATTGAAGATGACATCAACGGCGGAGCTGGAATCGAGCGAAAAGCATCTGGTAGATATGCTGACGCGTGTAATGCAGAGGAAGGAATACGTGATGAGCAACCATCTGTCATCATACGATCCGTCGGTGATGACGTCATTGGAGAACGTGGGATGGTTAGGGGAGGGGGGCGAGAGCCACTCGCATGTATTCGACGCGTCGGGGACGTTGGATCCACTGACATCGACGGTGTACGAGGCATTCTCCCAGGGAGGGAGGAGCAACAACGGGGAGTGCCACGTGGGCGAGGGAAGCGCCGACGCAAATCTGCAGGCCTGGCCTCAAGGCTACACAATATATCCTGCCATGCAGCAGGAGATGGTGGGAGCAGACATGCAGGAGATAATGCAGCCGCAGCTCAACAATGTGGCCATCCCCAGTGACTTCGACTCCAAAACTCATCCTCACCTCACTCCCCAATCACTCTGA 957 0.5047 MGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTHYINLPDQERDGAITFPEQPYRRNIQDKEYLLRTLQQLKSENDIALQLAKFVPSPLLTNNPGDINSEIEELQQEVNRLQQQLQMAEEQIRIYEPEPLKMTSTAELESSEKHLVDMLTRVMQRKEYVMSNHLSSYDPSVMTSLENVGWLGEGGESHSHVFDASGTLDPLTSTVYEAFSQGGRSNNGECHVGEGSADANLQAWPQGYTIYPAMQQEMVGADMQEIMQPQLNNVAIPSDFDSKTHPHLTPQSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0517 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Prci2g0517 318 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci2g0517 318 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Prci2g0517 318 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 Coils Coil 129 163 - -
Prci2g0517 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci2g0517 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Prci2g0517 318 FunFam MADS-box transcription factor 41 13 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0517 Prci-Chr2 3753872 3759049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0517 1 299 Type I MADS-box Gene Family AT1G22130 55.000 1.31e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci2g0517 SRF-TF 4.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0517 - - gmx:100305913 419.853