Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0500 ATGCCTCTACCACCGTCTCGGCACCCGCCGGCTTGCCGTCTTCACCCTAAGATTTGGCTAGCATGCGCTGGCACTTCCGTTCAAATACCTACGCTGCATTCCAGGGTCTATTACTTCTCTCAAGGCCACTTGGAGCAAGCCTACTCGGCTCCCCCATCCCTCTCCCGTTTTCTCCTGTCCAAGCCCTTCATTCATTGTCGCTTCTCCTGTGTTGAATATCTCGCTGATCCTGTTACAGACGATGTCTTTGTCAAGCTTGTCCTCCATCCGCTCAGTGATTTCGACGCCACTCGCGACCACTTTCGTCCTGTCGGCGAATCAGCCGAAGCACAGGGCGATTTCAATGTCGGGTCGTTTGCCAAGGTTCTGACGCCTTCTGATGCTAACAATGGTGGTGGATTATCTGTTCCAAGGTTCTGTGCTGACTCCATCTTCCCGCCGTTGAACTTACAATCTGATCGGCCGAACCAGACATCAGCCGTCACTGACGTTCACGGCGCCGACTGGGAGTTTCGTCACATTTATCGAGTGACACCTCGGCAGCACTTGCTCACTACTGGATGGAATAAGTTTGTCGATCACAAGAAGTTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAATTCCGCGGGGGATATGTTCATTGGGATTCGTAGAGCTCTGCCATTCGGTGCTGGGAACCGTGGCATTTGGGCCGGAAGTTGCGCCGAGATCGGTGGCGTGAAAACTAAGGTTGAGGAGGAGCAGCAGGAAGATTGCTATACTGTTTTAGGAGAATTTTCGAGGAATGGGAGGGGAAAGTTGTCCGCCAAGGCAATAGCGGAGGCAGCAGAATCGGCAGCACAGAACAAGCCGTTCGTGGTTGTGTATTATCCTCGGGCAGGATCGTCGGAATTTGTGTTGAAGGCGGAGGCCGTGGAGGAAGCGCTGAAAGTCAGATGGACTCCTGGAATGAGAGTCAAAATGGCTATGGATACTGAGGATTCGTCCAGGACGGCCTTGTTTCAGGGCACGGTCTATTCGGTAGATCACGGGCATCGGCCAGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAGTCTGAAGCGTTGCAGAATGCAAAGCGGGTCAGCCCTTGGCAGGTTGAACATATTTCCCATTCACCCCTGCTTCACATAGTTTTTCCCCCAGAAAAGAAGTTTAAAGACTCTCAGTATGCTGGGTTGCCAATTGATAGAGAGGAAGACCCCTCATTTACCACGACTAGATTCACTAATTCAGCAGTGACACGCTTGAATCACTCATTGTTGAAGGACAATACTTTTCCTGCAGGCATGCAGGGAGCCAGGCATGATCTATCTTCTGTGTGGAGATTTTCAAACTTACTAAATGATAACACTCATCTTTGTGCTGCTTGTTCTTATGTGAAGTGCTCAGTGCCTGAGTTGAAAACCGTGTCAACAGATTTACACATTGGCAGTTCTCAGTCAGGCAACTTGTCACCTGATAGTAAGAGTAGAATTCACTCCATTGGCAGACAGTTTGCTGGGGCCCATTGCTGCAACTCAACGAAACTTGGTGCTGGTTCATTTCAGCTATTTGGTAAGGTAATTCAAATGAATCAGCCGGTTGAAAGTGGCTTGCATGGTGCTGATTTAACTGGAAATAAGGTTTGCAATGCATCTGAATGTACTGACAAGCCGCTGGATCATTCAACTTACGCAAAATTGGTCAACAGGTTTGATGTTCAGCGCCAAAAAGCATCACTAGTTGAGTCATGTTATCTGTGA 1773 0.4929 MPLPPSRHPPACRLHPKIWLACAGTSVQIPTLHSRVYYFSQGHLEQAYSAPPSLSRFLLSKPFIHCRFSCVEYLADPVTDDVFVKLVLHPLSDFDATRDHFRPVGESAEAQGDFNVGSFAKVLTPSDANNGGGLSVPRFCADSIFPPLNLQSDRPNQTSAVTDVHGADWEFRHIYRVTPRQHLLTTGWNKFVDHKKLIAGDSVVFMKNSAGDMFIGIRRALPFGAGNRGIWAGSCAEIGGVKTKVEEEQQEDCYTVLGEFSRNGRGKLSAKAIAEAAESAAQNKPFVVVYYPRAGSSEFVLKAEAVEEALKVRWTPGMRVKMAMDTEDSSRTALFQGTVYSVDHGHRPGSPWRMLQITWDESEALQNAKRVSPWQVEHISHSPLLHIVFPPEKKFKDSQYAGLPIDREEDPSFTTTRFTNSAVTRLNHSLLKDNTFPAGMQGARHDLSSVWRFSNLLNDNTHLCAACSYVKCSVPELKTVSTDLHIGSSQSGNLSPDSKSRIHSIGRQFAGAHCCNSTKLGAGSFQLFGKVIQMNQPVESGLHGADLTGNKVCNASECTDKPLDHSTYAKLVNRFDVQRQKASLVESCYL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0500 590 SMART B3_2 119 221 IPR003340 GO:0003677
Prci2g0500 590 Pfam Auxin response factor 276 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g0500 590 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Prci2g0500 590 Gene3D - 116 221 IPR015300 -
Prci2g0500 590 CDD B3_DNA 118 219 IPR003340 GO:0003677
Prci2g0500 590 Gene3D - 313 383 - -
Prci2g0500 590 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Prci2g0500 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 542 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g0500 590 SUPERFAMILY DNA-binding pseudobarrel domain 116 221 IPR015300 -
Prci2g0500 590 FunFam Auxin response factor 117 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0500 Prci-Chr2 3633193 3638243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0500 13 542 B3 DNA Binding Superfamily AT1G77850 46.481 1.49e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g0500 B3 9.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0500 - - qsa:O6P43_019702 721.85