Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0472 ATGCGGGAGACAGAGACAGCAGCAATGGAGGATTTGCGGGGTGCTCTAAAAAATCGTAATTTAACGGTCTCCACCGTGGCAGATAAGGGTCGTTGTCTCTCAGCCATGAGAGATTTTTATCCAGGAGACGTAATTATAAGCCAGGAGCCTTATGTTTGTGTGCCAAATAATTCTTCAGCCGAAAGCAGGTGTGATGGATGTTTCACGACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGCTGTATGGTATTGTGGAAGCACTTGCCAGAGGGCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCTGGAAAAGGACAAGAGAAAATCTGTCACACCATCTATTCGTCTGATGGTAAAACTTTATCTTCGAAGGAAGTTGCAAAGTGAGAAGGTTATCCCAAGCACTGCTTCAGACAACTATAACTTGGTGGAGGCATTAGTGGCACATATGTCTGACATCAATGAGGAACGGCTGGTTCTGTACGCACAGATGGCTAATCTTGTAAACTTGATATTACAGTGGCCTGAAATCAACATCAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTCAGACCCTTGGGGACAGGATTGTATCCTGTAATTTCCATAGTCAACCACAGTTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGGGCTGTACAACACATACCAAAAGATTCGGAGGTATTGATAAGTTATATAGAGACTGCTAGAAGCACCATGACTCGGCAGAAGGTTCTCAAAGAGCAGTACCTATTCACTTGTACCTGTCCCCGCTGTGTTAGAATGGGCCAATTTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGCTTCGTACTAATGATGGACAAGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGATATGGAAGAGATCAAGTTGATTGAAACCAAAGTAAAATCACTATCTGAAGACAAAGCTCCTAAACTTCATACAACTGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATAATTGAGAAATTCCAATCAGCACTGTGCCATCCCTTTTCAATCAGCTTGTTGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGCTGGAACATTGGAGAGAAGCTCTGCAATACTGCAAATTGACCTTACCGGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGCTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACGCGGATGGTGCTGTTAAATCGCTGACCAAGGCAGTGGATGTACTAAGAATCACTCATGGGACAAATGCTCCTTTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAACAGTCCTCCAGATACAATTAG 1473 0.427 MRETETAAMEDLRGALKNRNLTVSTVADKGRCLSAMRDFYPGDVIISQEPYVCVPNNSSAESRCDGCFTTSKLKKCSGCQAVWYCGSTCQRAEWKLHRLECEVLSRLEKDKRKSVTPSIRLMVKLYLRRKLQSEKVIPSTASDNYNLVEALVAHMSDINEERLVLYAQMANLVNLILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIVNHSCLPNSVLVFEGRSAVVRAVQHIPKDSEVLISYIETARSTMTRQKVLKEQYLFTCTCPRCVRMGQFDDIRESAILEGYRCKNEKCCGFLLRTNDGQGFQCQECGLVRDMEEIKLIETKVKSLSEDKAPKLHTTGNYQEAVAVYKIIEKFQSALCHPFSISLLQTREKLLKLLMELEHWREALQYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDADGAVKSLTKAVDVLRITHGTNAPFMKELLMKLEEARAEASYQQSSRYN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0472 490 Gene3D - 63 113 - -
Prci2g0472 490 Gene3D Tetratricopeptide repeat domain 410 489 IPR011990 GO:0005515
Prci2g0472 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 23 476 - -
Prci2g0472 490 Pfam MYND finger 64 101 IPR002893 -
Prci2g0472 490 Gene3D - 114 198 - -
Prci2g0472 490 Pfam SET domain 30 255 IPR001214 GO:0005515
Prci2g0472 490 Gene3D SET domain 32 282 IPR046341 -
Prci2g0472 490 SMART set_7 19 262 IPR001214 GO:0005515
Prci2g0472 490 ProSiteProfiles SET domain profile. 19 256 IPR001214 GO:0005515
Prci2g0472 490 SUPERFAMILY SET domain 14 255 IPR046341 -
Prci2g0472 490 ProSiteProfiles Zinc finger MYND-type profile. 64 101 IPR002893 -
Prci2g0472 490 SUPERFAMILY TPR-like 351 455 IPR011990 GO:0005515
Prci2g0472 490 ProSitePatterns Zinc finger MYND-type signature. 64 101 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0472 Prci-Chr2 3400372 3410611 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci2g0472 SET 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0472 K11426 - qsa:O6P43_015224 765.763