Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0471 ATGCGGGAGACAGAGACAGCAGCAATGGAGGATTTGCGGGGTGCTCTAAAAAATCGTAATTTAACGGTCTCCACCGTGGCAGATAAGGGTCGTTGTCTCTCAGCCATGAGAGATTTTTATCCAGGAGACGTAATTATAAGCCAGGAGCCTTATGTTTGTGTGCCAAATAATTCTTCAGCCGAAAGCAGGTGTGATGGATGTTTCACGACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGCTGTATGGTATTGTGGAAGCACTTGCCAGAGGGCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCTGGAAAAGGACAAGAGAAAATCTGTCACACCATCTATTCGTCTGATGGTAAAACTTTATCTTCGAAGGAAGTTGCAAAGTGAGAAGGTTATCCCAAGCACTGCTTCAGACAACTATAACTTGGTGGAGGCATTAGTGGCACGTATCCTTTTGGCATTTTTTGCCTTTAGATCTAGTGTACTTAACACGGTTCTTGGTATATTTTCTCACATGTCAATGATGATTGTACTTTTTAACACTAACTTCGACGTAGATATGTCTGACATCAATGAGGAACGGCTGGTTCTGTACGCACAGATGGCTAATCTTGTAAACTTGATATTACAGTGGCCTGAAATCAACATCAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTCAGACCCTTGGGGACAGGATTGTATCCTGTAATTTCCATAGTCAACCACAGTTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGGGCTGTACAACACATACCAAAAGATTCGGAGGTATTGATAAGTTATATAGAGACTGCTAGAAGCACCATGACTCGGCAGAAGGTTCTCAAAGAGCAGTACCTATTCACTTGTACCTGTCCCCGCTGTGTTAGAATGGGCCAATTTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGCTTCGTACTAATGATGGACAAGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGATATGGAAGAGATCAAGTTGATTGAAACCAAAGTAAAATCACTATCTGAAGACAAAGCTCCTAAACTTCATACAACTGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATAATTGAGAAATTCCAATCAGCACTGTGCCATCCCTTTTCAATCAGCTTGTTGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGCTGGAACATTGGAGAGAAGCTCTGCAATACTGCAAATTGACCTTACCGGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGCTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACGCGGATGGTGCTGTTAAATCGCTGACCAAGGCAGTGGATGTACTAAGAATCACTCATGGGACAAATGCTCCTTTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAACAGTCCTCCAGATACAATTAG 1584 0.4211 MRETETAAMEDLRGALKNRNLTVSTVADKGRCLSAMRDFYPGDVIISQEPYVCVPNNSSAESRCDGCFTTSKLKKCSGCQAVWYCGSTCQRAEWKLHRLECEVLSRLEKDKRKSVTPSIRLMVKLYLRRKLQSEKVIPSTASDNYNLVEALVARILLAFFAFRSSVLNTVLGIFSHMSMMIVLFNTNFDVDMSDINEERLVLYAQMANLVNLILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIVNHSCLPNSVLVFEGRSAVVRAVQHIPKDSEVLISYIETARSTMTRQKVLKEQYLFTCTCPRCVRMGQFDDIRESAILEGYRCKNEKCCGFLLRTNDGQGFQCQECGLVRDMEEIKLIETKVKSLSEDKAPKLHTTGNYQEAVAVYKIIEKFQSALCHPFSISLLQTREKLLKLLMELEHWREALQYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDADGAVKSLTKAVDVLRITHGTNAPFMKELLMKLEEARAEASYQQSSRYN 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0471 527 Gene3D - 114 235 - -
Prci2g0471 527 Pfam MYND finger 64 101 IPR002893 -
Prci2g0471 527 SUPERFAMILY TPR-like 388 492 IPR011990 GO:0005515
Prci2g0471 527 Pfam SET domain 30 292 IPR001214 GO:0005515
Prci2g0471 527 Gene3D - 63 113 - -
Prci2g0471 527 SUPERFAMILY SET domain 14 292 IPR046341 -
Prci2g0471 527 ProSiteProfiles SET domain profile. 19 293 IPR001214 GO:0005515
Prci2g0471 527 SMART set_7 19 299 IPR001214 GO:0005515
Prci2g0471 527 ProSiteProfiles Zinc finger MYND-type profile. 64 101 IPR002893 -
Prci2g0471 527 Gene3D SET domain 32 319 IPR046341 -
Prci2g0471 527 ProSitePatterns Zinc finger MYND-type signature. 64 101 IPR002893 -
Prci2g0471 527 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 23 513 - -
Prci2g0471 527 Gene3D Tetratricopeptide repeat domain 447 526 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0471 Prci-Chr2 3400372 3410616 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci2g0471 SET 9.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0471 K11426 - qsa:O6P43_015224 745.347