Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0470 ATGCGGGAGACAGAGACAGCAGCAATGGAGGATTTGCGGGGTGCTCTAAAAAATCGTAATTTAACGGTCTCCACCGTGGCAGATAAGGGTCGTTGTCTCTCAGCCATGAGAGATTTTTATCCAGGAGACGTAATTATAAGCCAGGAGCCTTATGTTTGTGTGCCAAATAATTCTTCAGCCGAAAGCAGGTGTGATGGATGTTTCACGACAAGTAAACTTAAAAAGTGCTCTGGTTGTCAAGCTGTATGGTATTGTGGAAGCACTTGCCAGAGGGCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGTCCTCTCAAGGCTGGAAAAGGACAAGAGAAAATCTGTCACACCATCTATTCGTCTGATGGTAAAACTTTATCTTCGAAGGAAGTTGCAAAGTGAGAAGGTTATCCCAAGCACTGCTTCAGACAACTATAACTTGGTGGAGGCATTAGTGGCACGTATCCTTTTGGCATTTTTTGCCTTTAGATCTAGTGTACTTAACACGGTTCTTGGTATATTTTCTCACATGTCAATGATGATTGTACTTTTTAACACTAACTTCGACGTAGATATGTCTGACATCAATGAGGAACGGCTGGTTCTGTACGCACAGATGGCTAATCTTGTAAACTTGATATTACAGTGGCCTGAAATCAACATCAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCATGCAATGCACATACCATTTGTGACAGTGAACTCAGACCCTTGGGGACAGGATTGTATCCTGTAATTTCCATAGTCAACCACAGTTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCTGTAGTACGGGCTGTACAACACATACCAAAAGATTCGGAGGTATTGATAAGTTATATAGAGACTGCTAGAAGCACCATGACTCGGCAGAAGGTTCTCAAAGAGCAGTACCTATTCACTTGTACCTGTCCCCGCTGTGTTAGAATGGGCCAATTTGATGATATTCGAGAAAGTGCAATTTTGGAAGGATACAGATGCAAGAATGAAAAATGCTGTGGTTTCTTGCTTCGTACTAATGGATTCCAATGCCAAGAATGTGGACTAGTCAGGGATATGGAAGAGATCAAGTTGATTGAAACCAAAGTAAAATCACTATCTGAAGACAAAGCTCCTAAACTTCATACAACTGGCAATTATCAGGAAGCTGTTGCTGTATACAAAATAATTGAGAAATTCCAATCAGCACTGTGCCATCCCTTTTCAATCAGCTTGTTGCAAACTCGAGAAAAGCTTTTGAAGTTATTGATGGAGCTGGAACATTGGAGAGAAGCTCTGCAATACTGCAAATTGACCTTACCGGTCTATCAAAGAGTTTATCCAGCAGTTCATCCATTGCTTGGCTTGCAATATTATACTTGTGGAAAGCTTGAATGGTATCTGGGGGACGCGGATGGTGCTGTTAAATCGCTGACCAAGGCAGTGGATGTACTAAGAATCACTCATGGGACAAATGCTCCTTTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCCCGTGCAGAAGCCTCTTACCAACAGTCCTCCAGATACAATTAG 1575 0.421 MRETETAAMEDLRGALKNRNLTVSTVADKGRCLSAMRDFYPGDVIISQEPYVCVPNNSSAESRCDGCFTTSKLKKCSGCQAVWYCGSTCQRAEWKLHRLECEVLSRLEKDKRKSVTPSIRLMVKLYLRRKLQSEKVIPSTASDNYNLVEALVARILLAFFAFRSSVLNTVLGIFSHMSMMIVLFNTNFDVDMSDINEERLVLYAQMANLVNLILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIVNHSCLPNSVLVFEGRSAVVRAVQHIPKDSEVLISYIETARSTMTRQKVLKEQYLFTCTCPRCVRMGQFDDIRESAILEGYRCKNEKCCGFLLRTNGFQCQECGLVRDMEEIKLIETKVKSLSEDKAPKLHTTGNYQEAVAVYKIIEKFQSALCHPFSISLLQTREKLLKLLMELEHWREALQYCKLTLPVYQRVYPAVHPLLGLQYYTCGKLEWYLGDADGAVKSLTKAVDVLRITHGTNAPFMKELLMKLEEARAEASYQQSSRYN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0470 524 Gene3D - 63 113 - -
Prci2g0470 524 Gene3D Tetratricopeptide repeat domain 444 523 IPR011990 GO:0005515
Prci2g0470 524 Pfam SET domain 30 292 IPR001214 GO:0005515
Prci2g0470 524 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 23 510 - -
Prci2g0470 524 Gene3D - 114 235 - -
Prci2g0470 524 Pfam MYND finger 64 101 IPR002893 -
Prci2g0470 524 Gene3D SET domain 32 319 IPR046341 -
Prci2g0470 524 SUPERFAMILY SET domain 14 292 IPR046341 -
Prci2g0470 524 ProSiteProfiles SET domain profile. 19 293 IPR001214 GO:0005515
Prci2g0470 524 SUPERFAMILY TPR-like 385 489 IPR011990 GO:0005515
Prci2g0470 524 SMART set_7 19 299 IPR001214 GO:0005515
Prci2g0470 524 ProSiteProfiles Zinc finger MYND-type profile. 64 101 IPR002893 -
Prci2g0470 524 ProSitePatterns Zinc finger MYND-type signature. 64 101 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0470 Prci-Chr2 3400372 3410618 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci2g0470 SET 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0470 K11426 - qsa:O6P43_015224 737.643