Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0465 ATGTCTCGCACCCCTAGATCCACCGGTACCGTCAGGTGGTTCAATGCCTACAAGGGTTTCGGATTCATCGCCCCTGATGACGGCGGCGATGATCTCTTTGTCCATCACACTTCCATCCGATCCCATGGTTATCGCACCCTGGCCGAGGGTCAGCCCGTCGAGTTTCTCCTCGACTACGCCCAAGATGGACGAACCAAAGCTGTTGACGTCATTGCTCTCCTGAGATCCCGTCGTCCTGGTGGCGGTGGAAGAGGGTTTTATGGCGGCAGAGGCAGAGGGGATGGATATGGCGGGCGCTATATTGGCGTGAATACTCGCAGCCGTCCTTATCGGTATGGTCGCTGTGGCGGGATGGGGCGGAGGGGTGGAGGCTACGCTGGTGGCAATTACAGCGAGGGCCTCGAGTGTTACAATTGTGGCCGCGTGGGTCATTTGGCGAGAGACTGTTATCAGGGTGCTGGTGGTGGTGACACTCGCAGACGCGGTGGTGGTACTAGTGGCGGCGGCGGAGGCAGGGTGTGCTTTCATTGCGGTGAGGAAGGGCATTTTGCGAGGGAATGTCCCAATATTGAGAAATGA 579 0.5803 MSRTPRSTGTVRWFNAYKGFGFIAPDDGGDDLFVHHTSIRSHGYRTLAEGQPVEFLLDYAQDGRTKAVDVIALLRSRRPGGGGRGFYGGRGRGDGYGGRYIGVNTRSRPYRYGRCGGMGRRGGGYAGGNYSEGLECYNCGRVGHLARDCYQGAGGGDTRRRGGGTSGGGGGRVCFHCGEEGHFARECPNIEK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0465 192 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 FunFam Universal minicircle sequence binding protein (UMSBP), putative 167 192 - -
Prci2g0465 192 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Prci2g0465 192 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Prci2g0465 192 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Prci2g0465 192 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Prci2g0465 192 SMART csp_8 8 73 IPR011129 GO:0003676
Prci2g0465 192 SUPERFAMILY Retrovirus zinc finger-like domains 120 151 IPR036875 GO:0003676|GO:0008270
Prci2g0465 192 SUPERFAMILY Retrovirus zinc finger-like domains 155 191 IPR036875 GO:0003676|GO:0008270
Prci2g0465 192 Gene3D - 1 70 IPR012340 -
Prci2g0465 192 ProSiteProfiles Zinc finger CCHC-type profile. 174 189 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 Pfam Zinc knuckle 135 149 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 Pfam Zinc knuckle 172 189 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Prci2g0465 192 CDD CSP_CDS 8 70 IPR002059 GO:0003676
Prci2g0465 192 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Prci2g0465 192 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Prci2g0465 192 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Prci2g0465 192 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 189 - -
Prci2g0465 192 Gene3D - 169 192 - -
Prci2g0465 192 Gene3D - 128 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0465 Prci-Chr2 3366412 3368292 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Prci2g0465 CSD 1.3e-21 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0465 - - lang:109326521 184.882