Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0451 ATGTCTCTGAGCCCTCCTCGCGCAACCATAACCTACCAGCTCTACTGGTGCTTCCGCTGCAACCGACTGGTCAGGCTCGCCCCCGTCCACCCCTCCGACGTTATCTGCCCTCGCTGTTTTCAACACTTCCTCTGTGAATTCAACATACCCGCACCCACACAGCTCGCCCGTTTCATCGATCCCCCGCATTTGCTTGATGCCCTTTCGCTCATGCTCGACCCCACCATCCTCCGCTTCTTTGATCCAGAGTTCGAGCACCGCCACTTTCCGTGGATTCAGGGGCGAGCTCACCAGCATGAAGGTCGGACTCGTGAGAATTCACGTGTTGAAATTCCGGTTCGTCACATAAGACGTCCCCGGCATCGTAGTCTTGATGCCAGAGCTAGTGGTTTCGACCCAGAACTGGAAGCCCAACCTCGCCCTCGGACTTGGGTTATCGTTCGACCCGTTGATCGTTCCAACTCGTTCGAAAGGATTCCACGGCAACAAGATACAGTCCCACGACGGGTTGATCCGAGAGACTACTTTTTCGGGCCGGGGTTGGATGAACTGATTGAACACCTGACCGAAAATGACCGGCAAGGCCCGCCTCCAGCGCCGGATAGAGCTATCGATGCGATTCCGACTGTGAAAATAATGGAGACACATTTGAAGGAGAACCCTCATTGCCCGGTTTGCCAGGAGGAGTTTGAACTGGGTGGGGAAGCGAGGGAGTTATCCTGCAAGCATATATACCATTCTGACTGCATCGTGCCATGGCTAAAGCTCCACAATTCTTGCCCCGTTTGCCGGCAAGAGATGCCGGTGCTCTCAGACTCCGACGAATCCGGTGGCGGTGGCAGGTTGCGCCGGTGTTTAAGGTGGAGTCATTTGGCTTCACTTTGGCCTTTCCATGGAAGGTTCCGACGGGTTAATCCAGAACGCTAG 927 0.5523 MSLSPPRATITYQLYWCFRCNRLVRLAPVHPSDVICPRCFQHFLCEFNIPAPTQLARFIDPPHLLDALSLMLDPTILRFFDPEFEHRHFPWIQGRAHQHEGRTRENSRVEIPVRHIRRPRHRSLDARASGFDPELEAQPRPRTWVIVRPVDRSNSFERIPRQQDTVPRRVDPRDYFFGPGLDELIEHLTENDRQGPPPAPDRAIDAIPTVKIMETHLKENPHCPVCQEEFELGGEARELSCKHIYHSDCIVPWLKLHNSCPVCRQEMPVLSDSDESGGGGRLRRCLRWSHLASLWPFHGRFRRVNPER 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0451 308 SMART ring_2 223 263 IPR001841 -
Prci2g0451 308 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Prci2g0451 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 141 268 - -
Prci2g0451 308 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Prci2g0451 308 Pfam Ring finger domain 222 264 IPR001841 -
Prci2g0451 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Prci2g0451 308 FunFam E3 ubiquitin-protein ligase RING1-like 187 270 - -
Prci2g0451 308 SUPERFAMILY RING/U-box 203 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0451 Prci-Chr2 3264094 3265791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0451 195 297 C3H Transcription Factor Family AT1G68180 43.363 1.20e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0451 K11982 - qsa:O6P43_015206 353.984