Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0446 ATGGCGCACGTTGCCCAACTTCCCTGCGATTGCGACGGCGTTTGTATGGTCTGCAAGGCGAAGCCGGCAGAGGAGGAGAAGCTGACGTGTAAAACTTGCACCACGCAGTGGCATGCTGATTGTCTTTCCTCCCGTCCGGCAACTATGGAGGAGACCGTTCAATGGGAATGCTCCGACTGCTCCAGCCTGCCCTCTGACCTTCCGGTACTCAATGAGAAGACCTCGCAAGAGGGAGCTGGGGGCTTGATACGTACAATTCGAGCGATTGAGGCGGATGCTTCTCTAACAGAGATGGAGAAGGCCAAGAAACGTCAACGACTTCTCAGCGAAAAGGCTGTGTTAGAAGAGGACGAGGACGAAGCCGAAAAGAAGAGAGAAGAAGGAGGGAAGGACGTGCTGGATATTCTCAATGGAATTCTGAACTGCTCCTTCTGCCTGCAATTATTAGAGAGGCCGGTTACGACCCCTTGCGGCCACAATTTCTGCCTAAAATGCTTCCAGAGATGGATCGGGCAGGGCAAAACTATATGTGCAAAGTGTCGCGCTACAATCCCTCACAAAGTGGCAAGTCAGATTCGTATCAATTCTGCTCTTGTAAGTGCCATTCGTAAGGCAAAAGCTTCCAGAGTCAATGTTGGCGGAGAAACTTCCAAAGTCTACCATTTTGTACACAACCAAGATAGACCAGACAAGGCATACACAACAGAGAGGGCCCAAAGGAAAGGCAAAGCAAATGCTGCAAGTGGAAAGATTTTTGTAACAGTGCCTCAGGATCATTTTGGTCCAATCCCAACCGCGAATGATCCATTGCGGAATCAGGGTGTGCTTGTTGGCGAGTTTTGGGAGGATAGGCTTGAATGCAGGCAATGGGGTGTTCACTTCCCACATGTTAGTGGTATTGCTGGACAGTCAAATTATGGTGCACAGTCCGTTGTTCTTTCAGGCGGTTATGTTGACGACGAGGATCATGGAGAGTGGTTTCTCTACACCGGAAGTGGTGGTAGGGATCTCAGTGGAAACAAACGCACGAGCGATACACAGTCTTTCGACCAAAAGTTCGAAAAGTATAACTTGGCACTTAAATTAAGTTGTTTGAAGGGGTACCCAGTCCGCGTCATCAGATCCCATAAAGAGAAGCGGTCCTCGTATGCCCCCGAGGAAGGTTTGAGATACGATGGGATTTACAGGATCGAAAAATGCTGGCAAAAACAAGGATTGCAGGGCTTCAAGGTTTGCAGGTATTTGTTTGTTAGATGCGATAATGAACCCGCTCCTTGGACGAGTGATGAGCAAGGTGATCGCCCAAGACCATTACCAGTAATTCAAGAATTGAAGAAGGCTGTAGCCATAGCTGAAAGGAAAGAAACTCCATCTTGGGATTTTGATGAGCAAGATTTTTGTTGGAAGTGGAAGAAACCGCCGCCTCCAAGCCGAATGCGTTTAAAAAGTGTGGATCCAGAAGAGATTGAAAGGCCAGGGAAAGAAATAAAGAAATCCAGAAGCATGTCAATTAGAGAAAGCTTGTTAAAAGGATTTAAATGTTGTATTTGCGGGCAAATTATGGTTGCTCCTGTGACCACACCCTGTGCCCACAATTTTTGTAAGTCATGTTTAGAACGAGCATTCGAAGGCGTGCCTTTCATCAAAGAGAGAAATAAAGGTGGAAGGTCACTTCGTTCGCAAAAAAATGTACTAAAATGTCCTGTTTGTCCTACCGACATTTCTGATTTTCTTCAAAATCTTCAGGTTAACAGAGAGCTAAGTGGTTTAATTGACTCGCTGAAGGATGAGATTGAAGCAGAAAGAGATTCATCGAACTTGATCAATGAGAATTCAGGCGGGGCAAACGCAGACTATGCGGAAACTGGAGATGAGGAGGAGGAAGAATTGGTTGAGATGACGGGTCTCATAGGGTTATAG 1920 0.4677 MAHVAQLPCDCDGVCMVCKAKPAEEEKLTCKTCTTQWHADCLSSRPATMEETVQWECSDCSSLPSDLPVLNEKTSQEGAGGLIRTIRAIEADASLTEMEKAKKRQRLLSEKAVLEEDEDEAEKKREEGGKDVLDILNGILNCSFCLQLLERPVTTPCGHNFCLKCFQRWIGQGKTICAKCRATIPHKVASQIRINSALVSAIRKAKASRVNVGGETSKVYHFVHNQDRPDKAYTTERAQRKGKANAASGKIFVTVPQDHFGPIPTANDPLRNQGVLVGEFWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTSDTQSFDQKFEKYNLALKLSCLKGYPVRVIRSHKEKRSSYAPEEGLRYDGIYRIEKCWQKQGLQGFKVCRYLFVRCDNEPAPWTSDEQGDRPRPLPVIQELKKAVAIAERKETPSWDFDEQDFCWKWKKPPPPSRMRLKSVDPEEIERPGKEIKKSRSMSIRESLLKGFKCCICGQIMVAPVTTPCAHNFCKSCLERAFEGVPFIKERNKGGRSLRSQKNVLKCPVCPTDISDFLQNLQVNRELSGLIDSLKDEIEAERDSSNLINENSGGANADYAETGDEEEEELVEMTGLIGL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0446 639 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 241 436 - -
Prci2g0446 639 Gene3D - 241 440 IPR036987 -
Prci2g0446 639 SMART G9a_1 265 422 IPR003105 -
Prci2g0446 639 CDD PHD_SF 14 60 - -
Prci2g0446 639 SUPERFAMILY RING/U-box 507 595 - -
Prci2g0446 639 Coils Coil 584 611 - -
Prci2g0446 639 SUPERFAMILY PUA domain-like 244 440 IPR015947 -
Prci2g0446 639 Coils Coil 104 127 - -
Prci2g0446 639 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 603 IPR045134 -
Prci2g0446 639 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Prci2g0446 639 Pfam zinc finger of C3HC4-type, RING 142 180 - -
Prci2g0446 639 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Prci2g0446 639 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Prci2g0446 639 SUPERFAMILY RING/U-box 134 205 - -
Prci2g0446 639 CDD RING-HC_ORTHRUS_rpt1 140 185 IPR047498 -
Prci2g0446 639 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Prci2g0446 639 SMART ring_2 142 180 IPR001841 -
Prci2g0446 639 SMART ring_2 514 570 IPR001841 -
Prci2g0446 639 SMART ring_2 15 60 IPR001841 -
Prci2g0446 639 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Prci2g0446 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 209 IPR013083 -
Prci2g0446 639 MobiDBLite consensus disorder prediction 605 627 - -
Prci2g0446 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Prci2g0446 639 Pfam SAD/SRA domain 273 421 IPR003105 -
Prci2g0446 639 FunFam Predicted protein 98 207 - -
Prci2g0446 639 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Prci2g0446 639 SMART PHD_3 14 61 IPR001965 -
Prci2g0446 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 614 IPR013083 -
Prci2g0446 639 Pfam RING-type zinc-finger 514 568 IPR027370 -
Prci2g0446 639 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0446 Prci-Chr2 3226458 3230648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0446 1 605 C2H2 Transcription Factor Family AT5G39550 58.949 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0446 K10638 - qsa:O6P43_017375 901.353