Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0399 ATGTCAAAGTCTACGTCTCCGGAACCGTCACAGTCCAGTTATTCTTCATCTCGTACTAGGGAAACTAAACTGGCCGAAGACATGGACGATCCAGAATCTACAATGACTACAGTTGCTAATTTTGTTGAGCAACTGCATGCCAACTTGTCATCACCACTTGAGAAGGAATTTATCACAGCACGTTTGCTAGGCATTGCCAGGGCGAGAAAGGATGCTAGAACACTTATTGGTTCTCATGCCCAAGCAATGCCGTTGTTCATAAGCATTCTCAGAAATGGAACCCCTCTGGCAAAAGTTAATGTTGCTGCCACTCTGAGTGTCCTATGTAAAGATGAGGATTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCTTTGCTGTCACTTTTGAAGTCTGAAACCACAGAGGCAAGGAAGGCCGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTCACAGAAGGTGTAGTTCCGACTTTATGGGATCAACTAAATCCAAAAAACAAGCAAGACAAAGTTGTGGAGGGTTTTATTACTGGGGCATTGAGAAATCTGTGCGGTGACAAAGACAGATACTGGAAAGCATCATTGGAAACAGGGAGCGTGGATATTATTGTGGGTCTCTTGTCTTCAAACAATGCTGTTGCTCAGTCCAATGCAGCTTCTCTGCTAGCAAGACTGGTGCTGGCTTTCAGTGATAGCATCCACAAAGTAATAGAATCTGGTGCAGTCAATGCTTTACTTCAGCTTTTTGGTCAGGAAAATGATATTTCTGTCCGAGCAAGTTCGGCTGATGCTCTAGAGGCCCTTTCATCAAAATCAACTAAGGCAACGAAAGCCATTGTCAGCGCAGATGGTGTTTCAATTCTTATTGGGGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGAAACGGCCAGGATCTGCAGAAGCATGCAACTCAAGCTTTGGCAAATATTTGTGGGGGCATGTCTTCTTTAATACTATATCTTGGAGAACTCTCCCGTTCTCCTCGCCTAGCTGCACCAGTTGGTGATATAATTGGAGCTCTTGCTTATACACTGATGGTGTTTGAGGACAAACATGATGTTCATGGGGAGCCTTTTGATGCAACTCAAATAGAGCATATTCTAGTGACACTATTAAAGCCTCGAGACAATAAGCTGATTCAAGAGCGATTACTAGAGGCCATGGCTAGTCTATATGGAAATATCTATCTCTCAAAATGGCTTGAGCATGCAGATTCAAAAAAGTTTCTTATTGGACTCATAACTATGGCTGCTGCTGATGTGCAGGACTACCTCATACTCTCCTTGACAAGCTTGTGCTCTGATAGGGTAGGAATATGGGAGGCCATAAACAGGAGAGAAGGCATCCAGTTACTTATCTCAATGCTGGGACTATCCAGTGAGCAGCATCAAGAGTATGCAGTTCAGTTGCTATCAATTTTAATTGACCAGATTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGAATTCCTCAATTGGTTCAGTTATTAGAGACAGGATCACAGAAGGCTAGAGAGGAAGCTGCTCATATTCTGTGGAACTTGTGCAGTCACAGTGAAGATATTCGTGCATGTGTTGAAAGTGCTGGGGCCATACCAGCATTCTTATGGCTTTTAAAGATTGGTGGACCAAGAGGACAAGAAGCTTCTGCCATGGCACTCATTAAGCTTGTGCAAATTGCTGATTCTGCTACCATTAATCAATTGTTAGCATTGCTTCTTGGGGACACTCCAGGATCAAAGGTCCATACAATTCGAGTCTTGGGTCATGTACTTACTATGGCTTCACAGATGGACCTCCTGCAGAAGGGTTCTGCAGCTAATAAGGGGTTGAGATCTCTAGTTCAGGTTCTCAACTTATCAGATGAGGAAACCCAGGAACATGCGGCTTCTGTCCTAGCTGATTTGTTCAGCGCAAGGCAAGATATTTGTGATAGCCTCCTTGCAACTGATGAAATTGTGCTTCCTTGCATGAAGCTTTTGACCAGCAAAACTCAAGTAGTTGCGATTCAGTTGGCTAGAGCATTGGGTGCTCTGTCCCGTCCAACACACAGCAGATCTGCCAGCAAGATGCCTCATATTGGAGTAGAGGATGTCAAGCCACTAATTAAATTGGCTAAAACTTCCTCTATTGATGCTGCTGAAACTGCAGTTGCTGCACTGGCCAATCTTCTCTTTGATACCTCTATTGCTGCTGAAGTTTTGGCCGGAGATCTTGTTTCATCTTTAGCAAGAGTTCTGGAAGAAGGAACTTTGGAAGGTAAACAAAATGCAGCACGTGCACTTCATCAGTTACTTAAGCATTTTCCTGTTGGTGATGTTCTTAAGGGAGATGCTCAGTACCATTTCACTGTTCTTGCACTTGTTGGTTCCTTGAGTGCTATGAATATGGATGGAGCTGATGCTGCTGATGCTTTAGAAGTAGTTGCACTGCTTGCCCGGACAAACCAGGGCGACAATTTCACTTACACTCCATGGTCTGCATTTACAGAGTCACCATGCAATTTAGAACCTCTTGTACACTGCCTAGCTGAGGGGCCTCCCCAAGTGCAGGACAAGGCAATTGAAATTTTGTCTGCACTTTGTGGTGATCAATTAGTTGTTCTTGGGGATTTGTTGGCTGCTATGTCTGGATCCATTAATTCATTAGCTGATAGAATGATGAACTCCTCCAGTTTAGAAGCCAAAGTTGGAGGGGCTTCCCTACTTATTTGTGCTGCCAAGGAGCATAAAGAGCTGTCAATGGATGTACTTGACACTTCTGGGGATCTAAAACCATTAATATACGCTTTAGTAGATATGCTGAAGCAGAGCTCTATCTGTTCATTAGAGGTTGATAGACAAACTTGTAGAAATTTTATGGTGAAGAGAGCATTTCAGGAAGTTGATCTTGATATCCCTGACCTGGCCAAAGTCTCAGGTGTTACTGTTGCTTTGTGGTTACTCTCGATTATTGCTTCTTCCAATATAAAGAACAAACTCACAATTATGGAAGCTGGTGGACTCGAGGCCCTCTTTGAAAAGCTTGCAAGCCATACTTCCAATCCACAGGCAGAATTTGAAGATACAGAAGGAATATGGATAAGTACCTTGCTTCTGGCCATTTTGTTTCAAGATGGAAATGTTGTTCTATCCCCAGTAACAATGCACATTTTACCTTCTCTCACTCATTTACTACAGTCTGAAGAAGTGTCATATAAATATTTTTCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGATAAAGGAATAGCTCTTGCTGTTGCAAACTCTGGTGCTGTTGCCGGATTGATTTCTATGATTGGCTATATAGAGTCAGATATACCAAACATTGTTGCTTTATCAGATGAATTTTCACTGGTGCGAAACCCTGATCAAGTTGTTTTGAATCACCTTTTTGAAATTGAAGATATAAGATTGGGATCTACTGCACGAAAATCTATACCCCTCTTGGTGGACTTATTGAGACCAATTCCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAAACTCTTGACATGCATCGCAGATGGAAGTGATGCAAACAAAATAATCATGGCTGAAGCAGGTGCTTTGGAAGCTTTGACAAAATACCTGTCTTTGAGCCCTCAAGACTCAACTGAGGCCAGTATTTCTGAGTTATTAAGAATACTATTTTGCAATTCTGACCTTGTTAAACATGAAGCATCAGCAAGTTCTCTGAACCAACTCATCGCTGTTTTGCGTCTCGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTTATGAACTTTTCGGTGCTGAGAGTATTAGAAACTCAGAATTAGCTAAACAGGCCATTCAGCCTTTGGTTGACATGCTTAATACAACATCAGGTAGCGAGCAGGAGGCTTCTCTAATTGCATTAATCAAATTAACATCTGGAAATTCTTCAAAAGTGTCTCTGTTTGCTGATGTAGAAGGGAACCCACTTCAGAGTTTATGCCAGATATTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCAATGCTGCACAACTTTGCTTTGTCCTTTTTGCTAGCAGGAAGATTAGAGCTGATCCACTTGCCTCAGAACTCATAGAACCTCTTGTTTCACTGATGCAGTCTGATTCTGGCCCGGCAGTAGAAGCTGGGGTTTTTGCTTTTGAGAGATTATTGGAAGATGAACAACATGTGGAGCTTGCAGTAGCCTACAATGTTGTGAATCTCCTTGTTGGTTTGGTAGTGGGTTCCAACTATCAGCTGATTGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGATAGGACTCCGTGCAAACTAGACATGGTTGAAGCTGGAGTTATTGATAATTGTCTGAAGTTACTTGAATTTGCTCCTAGTTCATTGTGCTCTACTATTGCTGAAATATTCCGCATTTTAACAAATAGTAGTGCAATTGCTAGAAGTTCAGTGGCTGCAGAAATTGTAGAACCACTTTTTCAAGTTTTGCTCCGTCTAGATTTTGACTTGTGGGGACAGCACAGTGCCTTACAAGCACTAGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACCTTAAAACTAACTCCTAGTCAAGTTATTGAGCCCTTAATCTCATTCCTGGAATCCCCATCCCAAGCCATTCAGCAGCTTGGCACTGAACTGTTGTCTCATCTTCTTGCACAGGAACATTTTCAGCAAGACATAAAAACAAAGAATGCTGCTGTTCCTCTTGTTCAACTTGCAGGAATTGGAATACTGAACTTACAGCAAACAGCAATAAAAGCATTGGAGAAAATCTCCAAAAGATGGCCCAAAGCAGTTGCTGAAGCGGGAGGCATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGATCCTCAGCCGCCACATGCACTCTGGGAATCAGCTGCTTTGGTTCTTTCTAATATACTATGTTCCAATGCTGATTATTATTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTGTTGCACTCAACGGTTGAGAGTACCATTAGTGTAGCTCTTAATGGCCTAATAATTCATGAAAGAAGTGATGCTTCAAGCGCTGAACAGATGATGGAAGCTGAAGCTATAGATGTTCTGTTAGACCTTTTAAGATCTCATCAATGTGAAGAAGCATCTGGCAGATTACTTGAAGCTCTATTCAACAATGTAAAAATAAGAGAGATGAAGGCATCTAAGTATGCAATAGCACCATTATCTCAGTATCTGTTAGACCTGCAGACCCGATCACCATCTAGCAAGCTTCTTGTTGCTCTTGCTTTGGGAAATATTTCCCAGCATGAAGGACATGCTAGAGCTAGTGGTTCTGTTTCTGCTTGTCGTGCATTGGTAAGTTTACTTGAGGATCAGCCAACTGAAGAAATGGTGATGGTTGCTATTTGCGCGTTGCAAAACTTTGTCATGAACAGCAGGACTAATAGGCGAGCTGTTGCAGAAGCTGGTGGCGTACTGGTGATTCAGGAATTACTGCTATCTCCAAATCCAGAAGTTGCAGGACAAGCAGCATTGCTGATCCGATTTTTATTTTCTACTCACACACTACAAGAATATGTGTCAAATGAGCTGATCAGGTCTCTGACAGCTGCACTGGAAAGAGAGTTGTGGTCAACTGCCACCATTAATGAAGAGGTTTTGAAAACTCTGCACGTGATATTCACGAACTTCCCTAAGCTCCACGTATCAGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTCAAATCTGGTAGTGAAGTGGCTCAAGACTCTGTACTAGACACCCTGTGCTTGCTGAGACATTCTTGGTCAACCATGCCAATAGACATAGCAAAGTCTCAGGCTATGATTGCTGCTGAAGCCATTCCCATCCTGCAAATGCTCATGAAAACCTGTCCTCCAAATTTCCATGAGAGAGCAGATAGTCTTCTGCATTGCTTACCAGGTTGTTTGACTGTCACCATTAAACGTGGAAACAATCTCAAGCAAGCTATGGGAAGTACCAATGCATATTGCCAGTTAACAATAGGCAACAGTCCTCCGAAACAAACCAAGGTTGTGAGTCACACTATTTCGCCAGAATGGAAAGAAGGATTCACATGGGCATTTGACGTGCCTCCAAAGGGCCAGAAGCTGTACATCATATGCAAAAGCAAGAATACTTTTGGCAAGGCAACTCTTGGAAGAGTTACTATACAAATTGATAAAGTTGTAAACGAGGGAGTTTACAGTGGAATTTTCAGTCTTAATCACGACAGAAACAAAGATGGTTCTTCCCGAACACTTGAAATCGAGATTATATGGTCCAACAGGATCTCTGATGATGACCTTTGA 6408 0.4232 MSKSTSPEPSQSSYSSSRTRETKLAEDMDDPESTMTTVANFVEQLHANLSSPLEKEFITARLLGIARARKDARTLIGSHAQAMPLFISILRNGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSETTEARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDKVVEGFITGALRNLCGDKDRYWKASLETGSVDIIVGLLSSNNAVAQSNAASLLARLVLAFSDSIHKVIESGAVNALLQLFGQENDISVRASSADALEALSSKSTKATKAIVSADGVSILIGAIVAPSKECMQGNGQDLQKHATQALANICGGMSSLILYLGELSRSPRLAAPVGDIIGALAYTLMVFEDKHDVHGEPFDATQIEHILVTLLKPRDNKLIQERLLEAMASLYGNIYLSKWLEHADSKKFLIGLITMAAADVQDYLILSLTSLCSDRVGIWEAINRREGIQLLISMLGLSSEQHQEYAVQLLSILIDQIDDSKWAITAAGGIPQLVQLLETGSQKAREEAAHILWNLCSHSEDIRACVESAGAIPAFLWLLKIGGPRGQEASAMALIKLVQIADSATINQLLALLLGDTPGSKVHTIRVLGHVLTMASQMDLLQKGSAANKGLRSLVQVLNLSDEETQEHAASVLADLFSARQDICDSLLATDEIVLPCMKLLTSKTQVVAIQLARALGALSRPTHSRSASKMPHIGVEDVKPLIKLAKTSSIDAAETAVAALANLLFDTSIAAEVLAGDLVSSLARVLEEGTLEGKQNAARALHQLLKHFPVGDVLKGDAQYHFTVLALVGSLSAMNMDGADAADALEVVALLARTNQGDNFTYTPWSAFTESPCNLEPLVHCLAEGPPQVQDKAIEILSALCGDQLVVLGDLLAAMSGSINSLADRMMNSSSLEAKVGGASLLICAAKEHKELSMDVLDTSGDLKPLIYALVDMLKQSSICSLEVDRQTCRNFMVKRAFQEVDLDIPDLAKVSGVTVALWLLSIIASSNIKNKLTIMEAGGLEALFEKLASHTSNPQAEFEDTEGIWISTLLLAILFQDGNVVLSPVTMHILPSLTHLLQSEEVSYKYFSAQAMASLVCNGNKDKGIALAVANSGAVAGLISMIGYIESDIPNIVALSDEFSLVRNPDQVVLNHLFEIEDIRLGSTARKSIPLLVDLLRPIPERPSAPPVAVKLLTCIADGSDANKIIMAEAGALEALTKYLSLSPQDSTEASISELLRILFCNSDLVKHEASASSLNQLIAVLRLGSRNARYSAARALYELFGAESIRNSELAKQAIQPLVDMLNTTSGSEQEASLIALIKLTSGNSSKVSLFADVEGNPLQSLCQILSSASSLELKSNAAQLCFVLFASRKIRADPLASELIEPLVSLMQSDSGPAVEAGVFAFERLLEDEQHVELAVAYNVVNLLVGLVVGSNYQLIEATISALIKLGKDRTPCKLDMVEAGVIDNCLKLLEFAPSSLCSTIAEIFRILTNSSAIARSSVAAEIVEPLFQVLLRLDFDLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDIKTKNAAVPLVQLAGIGILNLQQTAIKALEKISKRWPKAVAEAGGIFELAKVIIQDDPQPPHALWESAALVLSNILCSNADYYFKVPVVVLVKLLHSTVESTISVALNGLIIHERSDASSAEQMMEAEAIDVLLDLLRSHQCEEASGRLLEALFNNVKIREMKASKYAIAPLSQYLLDLQTRSPSSKLLVALALGNISQHEGHARASGSVSACRALVSLLEDQPTEEMVMVAICALQNFVMNSRTNRRAVAEAGGVLVIQELLLSPNPEVAGQAALLIRFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFTNFPKLHVSEAATLCIPHLVGALKSGSEVAQDSVLDTLCLLRHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPNFHERADSLLHCLPGCLTVTIKRGNNLKQAMGSTNAYCQLTIGNSPPKQTKVVSHTISPEWKEGFTWAFDVPPKGQKLYIICKSKNTFGKATLGRVTIQIDKVVNEGVYSGIFSLNHDRNKDGSSRTLEIEIIWSNRISDDDL 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0399 2135 SUPERFAMILY ARM repeat 1176 1544 IPR016024 -
Prci2g0399 2135 CDD C2 2009 2099 - -
Prci2g0399 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 554 IPR000225 GO:0005515
Prci2g0399 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Prci2g0399 2135 SUPERFAMILY ARM repeat 860 1253 IPR016024 -
Prci2g0399 2135 MobiDBLite consensus disorder prediction 1 19 - -
Prci2g0399 2135 Pfam Armadillo/beta-catenin-like repeat 505 541 IPR000225 GO:0005515
Prci2g0399 2135 Gene3D C2 domain 2008 2133 IPR035892 -
Prci2g0399 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1802 1845 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 623 662 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 501 541 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1746 1790 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 459 499 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 543 583 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 713 750 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 287 335 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Prci2g0399 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Prci2g0399 2135 SUPERFAMILY ARM repeat 71 307 IPR016024 -
Prci2g0399 2135 SUPERFAMILY ARM repeat 1594 2005 IPR016024 -
Prci2g0399 2135 Pfam C2 domain 2008 2107 IPR000008 -
Prci2g0399 2135 Gene3D - 23 154 IPR011989 -
Prci2g0399 2135 Gene3D - 855 1144 IPR011989 -
Prci2g0399 2135 MobiDBLite consensus disorder prediction 1 32 - -
Prci2g0399 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 11 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Prci2g0399 2135 SUPERFAMILY ARM repeat 443 795 IPR016024 -
Prci2g0399 2135 Gene3D - 627 819 IPR011989 -
Prci2g0399 2135 Gene3D - 1610 2007 IPR011989 -
Prci2g0399 2135 SMART C2_3c 2008 2104 IPR000008 -
Prci2g0399 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Prci2g0399 2135 Gene3D - 359 626 IPR011989 -
Prci2g0399 2135 Gene3D - 1345 1606 IPR011989 -
Prci2g0399 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2111 IPR035892 -
Prci2g0399 2135 Gene3D - 1159 1344 IPR011989 -
Prci2g0399 2135 Gene3D - 155 355 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0399 Prci-Chr2 2839633 2850569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0399 472 700 U-box Gene Family AT2G23140 30.802 6.53e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0399 - - aprc:113846793 3311.16