Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0390 ATGTCAAACCAGAATCGTCGTTCGTCGTTTTCTTCCTCCACGACATCGTCGTTGGCGAAGCGGCATGCGTCATCCTCGTCGTCGGAGAATGTGGGGAAGCCTACTTCCCTGCCTCCACATTTGGCCAAGAAGCGCGCGCCTCTCGCTAACTTGACCAATCTAAAGAATGTGCCTCACGCTGCTTCACGGAACTCTCTGCCATCATCAACTCTGGTACCTGGTGCAACTAAAATCGCTAAGACAAACAAGGAACCCACCTCATCGAACGTGAAATCAAGTGCAGTTGTGTTCCCTGAGAAGTTCGAAGCTGCTCCTTCAGTTTCCAACTCCTCCGTCCCTCTTGCAAGCAGCATGGATGTTTCTCCTTGTAAATCAGATGGCATGTCTGTCTCTCTGGACGAGACCATGTCTACTTGCGACTCATTCAACAGTCCTGAAGTTGAATATATGGACAATAACGATGTTTCAGCTGTTGACTCTATTGGTAGAAAGACATTGGACATTCTAAACATCTCCGATAATACAGATAGAACAATAGGCAACATTTGTAACAGAGACATTCTTGTTGAGCTGGAGAGAGAAGACAAAATTGTCAATATCGATAATAATTACGTGGATCCACAGCTCTGTGCGACCTTTGCTTGTGACATCTACAAGCATTTGCGCGTATCTGAGGCAAAGAAAAGGCCGTCTACAGATTACATGGAGAGAGTTCAAAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTTGTAGAGGTGGCTGAAGAGTACCGGCTTGTGCCTGATACATTGTATTTGACAGTGAACTACATAGATCGGTATCTTTCAGGGAATGCCATGAACAGGCAAAAATTGCAATTACTTGGAGTTGCCTGCATGATGATTGCCTCTAAATATGAGGAGATTTGCGCGCCTCAGGTGGAAGAATTCTGCTATATAACTGATAACACGTACTTCAAAGAGGAGGTTTTGCAAATGGAATCAGCGGTGTTGAATTTTCTGAAATTCGAAATGACAGCCCCAACAACCAAATGTTTCTTGAGACGATTCGTTCGCGCAGCTCAAGGAGTGAATGAGGTCCCGTCATTGCAACTAGATTGCCTGGCCAACTACCTTGCCGAACTGTCTCTCTTGGAGTACAGCATGCTTTGTTATGCCCCATCACTTATAGCTGCTTCTGCAATTTTCCTCGCCAAATATCTACTCTTCCCTTCGACCAAACCCTGGAATTCCACATTGCAACATTATACACTTTACCAGCCTTCTGATCTGTGTGACTGCGTGAGGGATCTCCATCGTCTGTGTTGCAACACCCATACTTCTAATTTACCCGCAATCCGAGAGAAATACAGTCAGCACAAGGTGGAATTCTTGCTGGCATGTTTTTCAGTTCGTTTGTTTCATAGTAATAATCTGTTTGCTTCGATACCTTACTTGGATTTCATTCTTGTTTCAGTACAAATATGTGGCTAA 1485 0.4458 MSNQNRRSSFSSSTTSSLAKRHASSSSSENVGKPTSLPPHLAKKRAPLANLTNLKNVPHAASRNSLPSSTLVPGATKIAKTNKEPTSSNVKSSAVVFPEKFEAAPSVSNSSVPLASSMDVSPCKSDGMSVSLDETMSTCDSFNSPEVEYMDNNDVSAVDSIGRKTLDILNISDNTDRTIGNICNRDILVELEREDKIVNIDNNYVDPQLCATFACDIYKHLRVSEAKKRPSTDYMERVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQKLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTTKCFLRRFVRAAQGVNEVPSLQLDCLANYLAELSLLEYSMLCYAPSLIAASAIFLAKYLLFPSTKPWNSTLQHYTLYQPSDLCDCVRDLHRLCCNTHTSNLPAIREKYSQHKVEFLLACFSVRLFHSNNLFASIPYLDFILVSVQICG 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0390 494 SMART cyclin_7 252 336 IPR013763 -
Prci2g0390 494 SMART cyclin_7 349 437 IPR013763 -
Prci2g0390 494 MobiDBLite consensus disorder prediction 1 47 - -
Prci2g0390 494 ProSitePatterns Cyclins signature. 247 278 IPR006671 -
Prci2g0390 494 SMART Cyclin_C_2 345 466 IPR004367 -
Prci2g0390 494 MobiDBLite consensus disorder prediction 1 34 - -
Prci2g0390 494 FunFam Mitotic cyclin 6 230 330 - -
Prci2g0390 494 MobiDBLite consensus disorder prediction 54 73 - -
Prci2g0390 494 PIRSF Cyclin_A_B_D_E 1 472 IPR046965 GO:0016538|GO:0044772
Prci2g0390 494 SUPERFAMILY Cyclin-like 345 459 IPR036915 -
Prci2g0390 494 Gene3D - 230 343 - -
Prci2g0390 494 Pfam Cyclin, C-terminal domain 345 460 IPR004367 -
Prci2g0390 494 CDD CYCLIN_AtCycA_like_rpt1 206 341 - -
Prci2g0390 494 Pfam Cyclin, N-terminal domain 216 342 IPR006671 -
Prci2g0390 494 MobiDBLite consensus disorder prediction 55 73 - -
Prci2g0390 494 FunFam Cyclin A1 332 462 - -
Prci2g0390 494 CDD CYCLIN_AtCycA-like_rpt2 345 458 - -
Prci2g0390 494 Gene3D - 216 459 - -
Prci2g0390 494 PANTHER CYCLINS 143 456 IPR039361 -
Prci2g0390 494 SUPERFAMILY Cyclin-like 206 342 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0390 Prci-Chr2 2750323 2754417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0390 1 466 Core Cell Cycle Gene Families AT1G44110 63.941 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0390 K06627 - qsu:112028095 701.819