Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0378 ATGGATCATCCCTCCCACTTCCATCACCAGCACCAGCATGCAAGGTACGCTCCTCTTCCCCCTCATCACCCGCGCCATTCGCAGTTCCCCGAAGATCCCCGTTTGCGCCCTCACCACCTTCCTCTGCCGCCACAGCCGCCGGCACCAACTCTTGCACCCCCGCCCCCTCCCCCGTCTCTTTCCTATCGAACAGTCCGCACCCTTCCTCCCCCGCATCCCCACCCCTACAATCCTCCTCATCAATCCCAGCTTTCTTTGAACGCCCCGAACTATGCCCACCGTCCGGTTGAAGAAGAACGCCCTGTATCTGCTAGCCACCCTCATGATTTTAGTCACTCGCAGAGGGTTTCAAATCGGATGATTATTGATAATGATCGTCCTCGACATGGTTTCTCTGATTTCGACTATCGCAATGCCGATAACCGCATCGGTGGTTGGAACCCACCGAGGGTTTTGTCAGATAATCGGCCGTCGAGGCCTTACCCTCCCGTTGACTTTGACCGGGAATTGCATCATCAGCACCCATCGAATCACAAAATAGCGGCGCCATATCCGCCAGTTGATAAAGTTAGGTATAATTCAGAGGGCAACTCGAGGGGAAGAGTTGATCACAATGATGGTTATGAAATCAAGACAAGGGAGGAGTTTGCATGGGGTAGAGGCGATGAGAAATATCATCGCCGCGGGGATTTTGCATCAAATCTCAATGCATCTTCTGGAGACTTCGGAATCATGTCTAGTCAGAGTACATTATCAAGGGATCTTGATTCGAGAAATGGGGATTATGCGCATTACGGCATGGAACGGGACAACGAAATATCTAGGTGTACCAGAAGAGATGGACTTGGTGATAGCACGAGGTGGATAAATGATAGGAAGGGCCCCAGAGACCCACACAGTTTATCTTTTGAATTGGGAAACAACGAGAACGGTGGTGATGGTATTCGGGTAATGGCCGGGAAGTATTATGGTTCAGAATTGGGTAGATATAATAATAGAGGGAACAGGGAATCTGGTTATGAATTCAATCGTGCACCAAAGAAACAAATTCAGAAAAAGAGCGCACTTCTTAGAATTCAAATTGTAAAACCAAATCATAAGAACCGTGAGGTTGAACAGTTACAATATACCAGTTATGGTGATGACTCAAACTCTAATTCCTTTAGAGGCAAAGATCAATTTGAATATTCAGGTTTTGGGGTCAGAGGAGAAGAGAGAGAAAGAAGCCCTGTTGAGCTTGATATTTCTTTTAAATCAAATTCTCTGGTGGCTAAGGCCATTGTGGCACCTTCAAGTTCTGCAATTTCTGATGCAGATATCTCCGTTTCTGATACTGATTTTGCTCCTGCAGAAAAGGGAAAAAATGGTTTGGTCTCTGACAGTGATTCTCCTGATTTAAAACCTGCCAAACCATCTATGGCTGCTGGAAACTTAGGCGGCTCACCTTGCAAGGTAAATTGCATCCCTAGTTCTAGCAAGGAATTTAAGTTACAGAAGAAGGTCTCTGATAGTTCTCAGCTTTGTGCCACTGTAACTGCTAATTGTCATGGAAAAAATGAGGGGGCTCAAACCCCTAAGGGAATTCTTTCTCATGAAATTACCAACTCTTGTTCTGTTAAAACATCTCCAAGGGTTGCTAAGAAGAAAAAAGTTGTAAAGAAAGTGGTGAAGAAAGTTGTTTTGAATCCTGATTTAAATGTCTCCAGTTCCTTGTCATTGAATATGCCTGACAGAATTCTGAAAGCTGATAATGCTAGTCCTTCATCTACCTATGGATCTGACAAAACTGAAACTTCTTTAAAGGAGAAAATAACTGCTGTTGACAAGGTGTCCTTGCCAGATAATTTACTGTCTTCTCCGGAGGAAGGACATCTGATGCCCAATAATAGGAAGGAAGATGTACCTCTGCTGAGTACAGGGTCACATACCAGTTCACAAAAGCATGAGGCTGATGATAACCTTGATATGGGGAAAGTAGACGGAATTGAAAGAAGTGAAAACATTTCTAATTCTTCATTGGGTGCTTTTAGCATTAAAGATGAAAAGAATGATTCTGATTGCCCGAATGCAGGTGATTTTGTCCATGGCTTGCATATCAGTCCAAATACTGAAAAGGCTGCTAAGACTAAGTCAACCAATGGAACTTCTTTTTCTGATACCAGTAACAGCGATGATGTTGAGATGCAACTTTTTCAGAGTGAAGTGTCCCTATCACCTTGGCAGTATTCAAATGTACAATATTTAGATAATCAGTTTCAGGTAGAAGATGATAAGAACAGCAGACTGTCAACATCGGCTGAGAGTGAAATTAACACAGATGTTATAAACACATGTAATTCTGCTAATGTTAGTCTGGCTTGCTTGAGTTTTAATGAACTTACTGGTAATGCACTAAAGAACATTACAGTTTCTGACTTTGGAAATGATGGCAAGCTAGATTGCAAAACTAAAGCTCTTGCATTAACTGACAGCGTTATTTTAGGAGAAAACCTAGAGACTTGCTCCCCTGTACCAAGCGGTGAAATGGATGGTCGAACGTCAAGTTCTGGGGAAACTAGGATTTCAGATGGTCAAGAATGCCCAAAACATTCAAGAGTACCCATGCATGTTTCTGGTAATAGCCCCACTAATTCAGAAGAAAATATCATGGTTCCCCATAATGTTACTGTCAAAGATTCTGGAAAGGAGGCATCCCCTGTGGATGTCAATGCATCTCCTGAGACTTGTACCACAGAGCAGTCCCCAAATGCTAATTTTTTGGTTGTATTTGCTGAAGGAGATACAAATTTGTCCAAAAAAAGAAAAGTTGAGACACGTGTGAATTTTTCAAGTTCAGATATCAGGGGCATATCTCCAGACCCTATACATACAGTTAGCCTTGCAAATGTCCATACAACCTTAAGTCTGGTTAAGGATTCAAGTGTGTCTGAAGTTTTAAATCCACATGTTCAAAGCTCAAATTTTTGCTTACAATCCAGCACAGATGGGGTTAATGTTTTTCATGGGAAAGGGGAGGTTTCGGAGGCTGAAGTTTATTTTGGAAATAGTGGCAGTAACAGTGCAAATAGGGCTTCACCAATGTCTAAAATAAATGAAGTCACTACTAGTCACATGAATGTCACTTTATGTCAAGCTGAACTTTGTGATGCAATTGTGGTTGCCACATCTTGTGCTGAGGTTCCTATTAGTATAAGTGATAACAAGACACACCAGAAAGAGGTTGCATTTTCAAGCATGGTTAGACTTTCTGCTTCTCTATCCTTGCCTTATCCTGAGAGTAGTGCCAAATTATACAACAATAGTTTGTTTGGAGGATCTGTTGAGTCTGTGGATGCAAATACAAATATTACGAAGTTTGAATGCTCCCAATTGCAGCACCCAGGCATCAACTGTCATTCACTTGAGGATTTGGCTATTCCAAATAATCAGTTCCCAGTGTTGGAAAACGAGCATAAAGAAAAGTCTCTTCCAGTTGTGCCTTTAGACTACACTCAAAAGGACATTTTTGTTTCTGGAAATACTGTGAGAGAGAAGATTGACATACAGGATGCTGAAAAATGTGACTCCAGAGAATTTGTAGAAAGATCTTCGAGTGCTGATTTGGAATCCAGTGATCCTCAAACAAAGGATGATTTACCTCTTGAGCATCAATCTCTGTCCTGCCCAGTTGATACTGATGCTGTTACAACTAGTGACTGCAGTACAGTATCGAATATGCTTTCTTCAGGGACCAAGCCTGACATACTTGATAGTAGGACTTCAGATTGTCAAGCAATCCAAAACGAAACCATTCTAGGGGATGAACATAATGTGAATAGCAGATCTAATGTTGATCAGGATTGCGACTTACCTGCTTCTACATTATATTCACAGTATACTAGAAAGAATATAAAGTCAAGTCCTGCAGCCAGACGAGATAACTTGATCACAGGGAAGATGTTGTCTCAACCTTTGCAAGTTGATTCCAAAGTTATGACTCAAGGAATGAATTCATCTTGTTCAGAGTTAAATTGTGGCAAAAACCACTCAGGTTCTGCCATTCCTGCTACTTTCCAGGGCCGATCTTATTTAAATTTTCCCAAGTCAAAGGCATCTGCATTTTCAACCCAGGTTTCAAAACTTCGAACTTGGCACCGTGCAGGTAATAATTCTGGTTCTCTAACAGGAAACAAGCCTTTGGCAGGATCTGTGCCTCCCAAAAGGTCAATTTCAGAAAAGAAAGGGAACTTTCAGAATACTTCTTACATCCGTAAAGGTAACAACAGTCTTGTAAGGAAACATCCTTCAGTTTCCGCTCCACCACAATGCTCTGCTAATCAGTCTTCTTCTTTGGGGTTTGATGAATTTCGAAAGAGCACTGGATCTGAAATTAAGGTTGAAATCCCAAATCAAGCCAATCTCTTGAAAACAGGATTGACGCACGCTCCCTTGGAGAGGCAAAGAACACCTCCGCTACCTGTTGACAATAAATTACCTAATCATATGGTAACAGCATGTGAGGAGAATAAATCTTTCTCATTACTGGAACACCTTTCCAATGTTCCCTGTGATAATGCATCTGAACCTAGAAACTTTATGGAACCTTGTGATGCTCCAAACTCTGCAGAGGATGCACTGAAGTTGGGTGGAACTGTTGAAAGTCTAACTCTTTCATCAAACAATGTGGAAAGCCAAGTTGAAGCACATGATGAGAATGCGTCTTTGGATTCAAAGAGAATAACCTATGTAAAGCGCAAATCAAATCAGTTGGTTGCCACTTCAAATTCTTGTGAAGTTTCTGTTGCTACTGATGACAATGTCCAGATGGCCCCTTCTGATGGGTACTACAAGAGGAGCAAAAATCAGTTAGTTAGGACTACATTTGAAAGTCAAATGAACCAGACAGTTGTGATGCCCACTGTAAACTCTGATGGGCACATGGCCCGAAAGGCTAGCTGCAACAGGAGGATTAGTAAGAGGCGGTCATTGAAGGTTGGAAGGTCATGCAAACCTTTGAGAGCCTCATTGGTGTGGACACTCTGTGGTGCAAGTTCATCCAAAAATGACAATGACCCTCTGCATCATCAGAAGGTTCTGCCTCACTTGTTTCCATGGAAAAGAGCATCACATTTACGGAGTTTCATTTGTAATCCTCTTTTGAGCTCCAATACTAGTCCGTTATCTGCAATCAGCAAGAAATTGGTTCTCTCGAGAAAGAGAGATACTGTTTATACTAGGTCAACCCATGGATTTTCCCTTCGGAAATCCAAGGTGTTAGGTGTTGGTGGATCTAGTCTAAAATGGTCAAAATCAATCGAGAAGTCTTCAAAGAAAGCTAACGAGGAAGCCACGCTTGCAGTTGCTGCTGTAGAGAAGAAAAAGAGGGAACAGAAAGATGTTGCTTGTATCAGTTCTCGGGCAAAGAGAGAACGTATATTTCGTATTGGGTCAGTTCGTTACAGAATGGACTCTTCGGGGAGGACACTTCAAAGAATTTCAGATGAGTCCATGCCCTCTGCTTCTCTCCGTTCAGGTTTGCATGTGAAAAGTTCATACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTTCGAATTGGCAATGGCCATCAGCTTATCAGAGACCCAAAGAAGCGAACTCGAATGTTGGCTAATGAAAAAATTAGATGGAGTTTACACACAGTTAGACAACGGTTGGCTCGAAAGCAGAAGTATTGTCAATTCTTTACTAGATTCGGGAAATGTAACAAGGATGACAGGAAGTGTCCCTATATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTTCTGAATGGTTTATGTTCCACTCCCAACTGCAAACTGACTCATAAGGTTATACCAGAGAGAATGCCTGACTGTTCTTATTTTTTGCAAGGTTTATGCACAAACAGAAATTGCCCCTATAGGCATGTTAATGTGAACCCTAAGGCACCTGTTTGTGAAGGATTTCTCCGGGGCTATTGTGCCAATGGCAACGAGTGTCGGAAGAAGCACACCTATGTCTGCCCTACTTTTGAAGCAACAGGAATCTGCACCCAAGGGACCAAATGCAAACTTCATCACCCCCAAAAACAAGGCAAAGGAAAGAAAAGGAAGAGATCCGTAGAGCAGAGGAACTGTAAAAGGCGATACTTTGGTTCTTTACAGATTGATGCTTCTGAACCTGGGACGATGGTTGTAGCTCCTCGGCAAGAGGAACAAAATAAGGATGACCTTGAAGGAGAACTGACTGACTATATCAGTCTGGATGTCGATGACGATGAAGACGTTGCAGAACTTACAGGACAAGCGAGCGAGCAATCAACATTATGTGATAGTGAACCTGTGGATATAGTGTTGGATGATCAGGATGAACTCATTAAACCGGTTCTTATAATGAAATCTCTAGTCTGA 6399 0.4216 MDHPSHFHHQHQHARYAPLPPHHPRHSQFPEDPRLRPHHLPLPPQPPAPTLAPPPPPPSLSYRTVRTLPPPHPHPYNPPHQSQLSLNAPNYAHRPVEEERPVSASHPHDFSHSQRVSNRMIIDNDRPRHGFSDFDYRNADNRIGGWNPPRVLSDNRPSRPYPPVDFDRELHHQHPSNHKIAAPYPPVDKVRYNSEGNSRGRVDHNDGYEIKTREEFAWGRGDEKYHRRGDFASNLNASSGDFGIMSSQSTLSRDLDSRNGDYAHYGMERDNEISRCTRRDGLGDSTRWINDRKGPRDPHSLSFELGNNENGGDGIRVMAGKYYGSELGRYNNRGNRESGYEFNRAPKKQIQKKSALLRIQIVKPNHKNREVEQLQYTSYGDDSNSNSFRGKDQFEYSGFGVRGEERERSPVELDISFKSNSLVAKAIVAPSSSAISDADISVSDTDFAPAEKGKNGLVSDSDSPDLKPAKPSMAAGNLGGSPCKVNCIPSSSKEFKLQKKVSDSSQLCATVTANCHGKNEGAQTPKGILSHEITNSCSVKTSPRVAKKKKVVKKVVKKVVLNPDLNVSSSLSLNMPDRILKADNASPSSTYGSDKTETSLKEKITAVDKVSLPDNLLSSPEEGHLMPNNRKEDVPLLSTGSHTSSQKHEADDNLDMGKVDGIERSENISNSSLGAFSIKDEKNDSDCPNAGDFVHGLHISPNTEKAAKTKSTNGTSFSDTSNSDDVEMQLFQSEVSLSPWQYSNVQYLDNQFQVEDDKNSRLSTSAESEINTDVINTCNSANVSLACLSFNELTGNALKNITVSDFGNDGKLDCKTKALALTDSVILGENLETCSPVPSGEMDGRTSSSGETRISDGQECPKHSRVPMHVSGNSPTNSEENIMVPHNVTVKDSGKEASPVDVNASPETCTTEQSPNANFLVVFAEGDTNLSKKRKVETRVNFSSSDIRGISPDPIHTVSLANVHTTLSLVKDSSVSEVLNPHVQSSNFCLQSSTDGVNVFHGKGEVSEAEVYFGNSGSNSANRASPMSKINEVTTSHMNVTLCQAELCDAIVVATSCAEVPISISDNKTHQKEVAFSSMVRLSASLSLPYPESSAKLYNNSLFGGSVESVDANTNITKFECSQLQHPGINCHSLEDLAIPNNQFPVLENEHKEKSLPVVPLDYTQKDIFVSGNTVREKIDIQDAEKCDSREFVERSSSADLESSDPQTKDDLPLEHQSLSCPVDTDAVTTSDCSTVSNMLSSGTKPDILDSRTSDCQAIQNETILGDEHNVNSRSNVDQDCDLPASTLYSQYTRKNIKSSPAARRDNLITGKMLSQPLQVDSKVMTQGMNSSCSELNCGKNHSGSAIPATFQGRSYLNFPKSKASAFSTQVSKLRTWHRAGNNSGSLTGNKPLAGSVPPKRSISEKKGNFQNTSYIRKGNNSLVRKHPSVSAPPQCSANQSSSLGFDEFRKSTGSEIKVEIPNQANLLKTGLTHAPLERQRTPPLPVDNKLPNHMVTACEENKSFSLLEHLSNVPCDNASEPRNFMEPCDAPNSAEDALKLGGTVESLTLSSNNVESQVEAHDENASLDSKRITYVKRKSNQLVATSNSCEVSVATDDNVQMAPSDGYYKRSKNQLVRTTFESQMNQTVVMPTVNSDGHMARKASCNRRISKRRSLKVGRSCKPLRASLVWTLCGASSSKNDNDPLHHQKVLPHLFPWKRASHLRSFICNPLLSSNTSPLSAISKKLVLSRKRDTVYTRSTHGFSLRKSKVLGVGGSSLKWSKSIEKSSKKANEEATLAVAAVEKKKREQKDVACISSRAKRERIFRIGSVRYRMDSSGRTLQRISDESMPSASLRSGLHVKSSYIPRRLVIGNDEYVRIGNGHQLIRDPKKRTRMLANEKIRWSLHTVRQRLARKQKYCQFFTRFGKCNKDDRKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKAPVCEGFLRGYCANGNECRKKHTYVCPTFEATGICTQGTKCKLHHPQKQGKGKKRKRSVEQRNCKRRYFGSLQIDASEPGTMVVAPRQEEQNKDDLEGELTDYISLDVDDDEDVAELTGQASEQSTLCDSEPVDIVLDDQDELIKPVLIMKSLV 2132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0378 2132 ProSiteProfiles Zinc finger C3H1-type profile. 1949 1975 IPR000571 GO:0046872
Prci2g0378 2132 MobiDBLite consensus disorder prediction 704 722 - -
Prci2g0378 2132 ProSiteProfiles Zinc finger C3H1-type profile. 1894 1923 IPR000571 GO:0046872
Prci2g0378 2132 MobiDBLite consensus disorder prediction 39 78 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 1405 1443 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 840 855 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 287 307 - -
Prci2g0378 2132 PANTHER CCCH ZINGC FINGER 336 2129 - -
Prci2g0378 2132 ProSiteProfiles Zinc finger C3H1-type profile. 1976 2003 IPR000571 GO:0046872
Prci2g0378 2132 MobiDBLite consensus disorder prediction 703 722 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 892 911 - -
Prci2g0378 2132 Gene3D - 1977 2039 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 1192 1215 - -
Prci2g0378 2132 FunFam Zinc finger CCCH domain-containing protein 7 1977 2038 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 1379 1443 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 832 880 - -
Prci2g0378 2132 FunFam zinc finger CCCH domain-containing protein 3 1924 1975 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 1 114 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 446 477 - -
Prci2g0378 2132 SMART c3hfinal6 1949 1974 IPR000571 GO:0046872
Prci2g0378 2132 SMART c3hfinal6 1923 1947 IPR000571 GO:0046872
Prci2g0378 2132 SMART c3hfinal6 2003 2025 IPR000571 GO:0046872
Prci2g0378 2132 SMART c3hfinal6 1976 2002 IPR000571 GO:0046872
Prci2g0378 2132 SMART c3hfinal6 1894 1922 IPR000571 GO:0046872
Prci2g0378 2132 MobiDBLite consensus disorder prediction 1192 1212 - -
Prci2g0378 2132 MobiDBLite consensus disorder prediction 612 655 - -
Prci2g0378 2132 Gene3D - 1921 1976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0378 Prci-Chr2 2656153 2665766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0378 1900 2025 C2H2 Transcription Factor Family AT2G32930 32.576 2.79e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci2g0378 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0378 - - pcin:129303221 4121.62