Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0348 ATGGAAGATTCTAATTTTGTAGCAGCTGCTTCATCAGCCGGTGATCAGGACTCCAAGACTTGTCCTCGCGGTCACTGGAGGCCAGCCGAGGATGAAAAACTCCGGCAGCTTGTAGAACAATACGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCGAGGATTAACAGGAGGCCGTTTACAGAAGAAGAGGAAGAAAGATTGCTGGCAGCTCACCGCATTCACGGGAACAAGTGGGCACTGATAGCGAGGCTTTTTCCTGGTCGAACTGATAACGCTGTGAAGAATCACTGGCACGTTATTATGGCACGAAAGCAAAGAGAACAATCCAAGCAGCAGCTGAGTGGGAAGAGAGTCTTCCAAGATGTTTACAATGATTCTTCCAGTAACAGTTCCTCTTGTAATAAAAGATCAAAATCTCAAGATATCTTTAGTTCCCAAACGTTCTTTGACTTCCGGAACATGGATAAAAGCAGAATCATTGCAGAATATTCTCCCTCCGTGTCTTTGGCTTCTTGGAATTTTGCATCCATGGCGAAACAAGGAAAGGACAATAGTTACTTCAACCCCTGCTTTAATATTTACTTCTCAGAATGTTCCAAAAGTTCAGATAGATATCTTTACAGAATTTATCCAAATTCTGCATCATCGTATGGCAGCATTCTACCAAACTACAGGAGGGTTATTCCAGGTCCCTACGCAGCAGTCTTTGGTTGTGATGGTGGTGATGAGAGAAATAGGACAGTAAATAAGGACTTGACGAATGTATGCGACACTTCATCTGCATTTGCAAACACGAGAGCTTCTATGGAACAAGAGGAAGCAGATACACACACAGAAGTTCCTTTCATTGATTTTCTGGGCGTGGGTGTGCCATCGTCATGA 939 0.4377 MEDSNFVAAASSAGDQDSKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKQQLSGKRVFQDVYNDSSSNSSSCNKRSKSQDIFSSQTFFDFRNMDKSRIIAEYSPSVSLASWNFASMAKQGKDNSYFNPCFNIYFSECSKSSDRYLYRIYPNSASSYGSILPNYRRVIPGPYAAVFGCDGGDERNRTVNKDLTNVCDTSSAFANTRASMEQEEADTHTEVPFIDFLGVGVPSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0348 312 CDD SANT 86 117 IPR001005 -
Prci2g0348 312 CDD SANT 26 67 IPR001005 -
Prci2g0348 312 Pfam Myb-like DNA-binding domain 26 86 - -
Prci2g0348 312 Gene3D - 77 138 - -
Prci2g0348 312 SMART sant 22 71 IPR001005 -
Prci2g0348 312 SMART sant 74 122 IPR001005 -
Prci2g0348 312 FunFam MYB transcription factor 76 148 - -
Prci2g0348 312 FunFam MYB transcription factor 23 74 - -
Prci2g0348 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Prci2g0348 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Prci2g0348 312 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Prci2g0348 312 MobiDBLite consensus disorder prediction 1 26 - -
Prci2g0348 312 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Prci2g0348 312 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Prci2g0348 312 PANTHER MYB PROTEIN-RELATED 23 145 - -
Prci2g0348 312 Gene3D - 23 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0348 Prci-Chr2 2483331 2484862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0348 21 134 MYB Transcription Factor Family AT1G17950 81.579 2.20e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g0348 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0348 K09422 - gmx:100817328 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0382 15 2500869 2502613 Prci2g0348 2 2483331 2484862 CCT
Prci2g0348 2 2483331 2484862 Prci2g0348 2 2483331 2484862 ECH