Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0298 ATGGCCTGCCGGGACTGTGAGGCGACCTTAAATGTGAGGAGGCCTCACTTCTACGAGCTTTATTCCTCTACATCGAGCTCCGAGAGACTGAAAATTCCGGATGGATTCAGCCATTACATGGAAGGCAGGACGTCTGGTTTAGTCTCACTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATCTTTTCCTCCATCATGGATGGCCGACATTTTTGGAAGATCACACTATAGAAGTTGGTGACCTTTTGGTTTTCAGATTTGAGGGTCATTTAAGCTTCACTGTGCTAGTTTTTGACCAAAGAGCATGTGAGAAAGAAGCAGCATTTATATCTGAATGCAGTCAATATGCATGTGACCTCAACCATTTTAATGCACATAAAAGAAGTAGGGAGGAGAACTGCTCTTTGAATTTTGTTGCTGAAGGTTTGCTGAAGAAATTGAAAGGGAGTACCTTTGAGAACCAGCAACTCAAGACGGATATAGGTAATAAAGATTTATCCTTGCTTGAGTGGGTAAAACCGATTAATATGTTCAGAGAAAAAGGAGAATCCTCCAAAGAAGATGCACAACTTAGATGCCCAACTAGTGATGTTGCTGTGCCTTCTCAAATGGAATATAACAACGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCATAGTAGAGTCTGTCTGTCAAAATTGTCATCATACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCCTCTTACCCGTATTTTGTGAGAATCATGAAAAGCTTCAATATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGCACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACACACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATTGTTGGAATAGGAAGGGATGGTATAGACTGTCACGTTGGGAAAGTAGCTTTTAGTAGGCCTCTTACAGGGCATTCCATCAATTCCCATAGAACTTCTCAGTATATGCCAATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATTTGATAAAAAGCGGTCAAGGATGGGTCAAGATGCTGTTTTGTCTGTGGATGCAAAGAAACCTGGCAGAGTGTCGAAGACTTCTAGGAAGACAGGGATTTGCCCAGTGTCAAAAGCTGCTCATAGTAAGTTGGTTGTTCAGAGAAGGCATCGAACTGACGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGCGAATGCTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAATTCAATGTCAGCGGATCATACACTTTGAAAATCCCTTATCAATTCTCTGCAGCGTATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGACTGTTGGACTGTCAACTCTGTGCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGGTGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGCAAGGAAGGGCTTGACCATCAGAATAGGGAACCAAAATCTAATAGATTAGCTATAGTTCCATCTACCAGCGAGCACCCTTGCGTGTGA 1848 0.4167 MACRDCEATLNVRRPHFYELYSSTSSSERLKIPDGFSHYMEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWPTFLEDHTIEVGDLLVFRFEGHLSFTVLVFDQRACEKEAAFISECSQYACDLNHFNAHKRSREENCSLNFVAEGLLKKLKGSTFENQQLKTDIGNKDLSLLEWVKPINMFREKGESSKEDAQLRCPTSDVAVPSQMEYNNECEEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSSYPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRIVGIGRDGIDCHVGKVAFSRPLTGHSINSHRTSQYMPIKAKVNPKCNGNVDLFDKKRSRMGQDAVLSVDAKKPGRVSKTSRKTGICPVSKAAHSKLVVQRRHRTDDELSSQAKAGLRMLFALDEQRVAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAYLPSYKTEVVLRNLRGDCWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHQNREPKSNRLAIVPSTSEHPCV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0298 615 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Prci2g0298 615 Gene3D - 244 357 IPR015300 -
Prci2g0298 615 Gene3D - 476 586 IPR015300 -
Prci2g0298 615 Gene3D - 8 110 IPR015300 -
Prci2g0298 615 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Prci2g0298 615 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Prci2g0298 615 Pfam B3 DNA binding domain 491 576 IPR003340 GO:0003677
Prci2g0298 615 CDD B3_DNA 22 106 IPR003340 GO:0003677
Prci2g0298 615 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Prci2g0298 615 CDD B3_DNA 260 354 IPR003340 GO:0003677
Prci2g0298 615 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Prci2g0298 615 ProSiteProfiles B3 DNA-binding domain profile. 491 587 IPR003340 GO:0003677
Prci2g0298 615 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Prci2g0298 615 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 356 IPR044837 -
Prci2g0298 615 SMART B3_2 491 589 IPR003340 GO:0003677
Prci2g0298 615 SMART B3_2 17 108 IPR003340 GO:0003677
Prci2g0298 615 SMART B3_2 262 358 IPR003340 GO:0003677
Prci2g0298 615 CDD B3_DNA 489 583 IPR003340 GO:0003677
Prci2g0298 615 SUPERFAMILY DNA-binding pseudobarrel domain 484 585 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0298 Prci-Chr2 2091607 2095529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0298 260 574 B3 DNA Binding Superfamily AT3G18990 22.121 3.17e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g0298 B3 1.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0298 - - pcin:129303869 1263.44