Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0297 ATGGCCTGCCGGGACTGTGAGGCGACCTTAAATGTGAGGAGGCCTCACTTCTACGAGCTTTATTCCTCTACATCGAGCTCCGAGAGACTGAAAATTCCGGATGGATTCAGCCATTACATGGAAGGCAGGACGTCTGGTTTAGTCTCACTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATCTTTTCCTCCATCATGGATGGCCGACATTTTTGGAAGATCACACTATAGAAGTTGGTGACCTTTTGGTTTTCAGATTTGAGGGTCATTTAAGCTTCACTGTGCTAGTTTTTGACCAAAGAGCATGTGAGAAAGAAGCAGCATTTATATCTGAATGCAGTCAATATGCATGTGACCTCAACCATTTTAATGCACATAAAAGAAGTAGGGAGGAGAACTGCTCTTTGAATTTTGTTGCTGAAGGTTTGCTGAAGAAATTGAAAGGGAGTACCTTTGAGAACCAGCAACTCAAGACGGATATAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCATAGTAGAGTCTGTCTGTCAAAATTGTCATCATACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCCTCTTACCCGTATTTTGTGAGAATCATGAAAAGCTTCAATATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGCACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACACACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATTGTTGGAATAGGAAGGGATGGTATAGACTGTCACGTTGGGAAAGTAGCTTTTAGTAGGCCTCTTACAGGGCATTCCATCAATTCCCATAGAACTTCTCAGTATATGCCAATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATTTGATAAAAAGCGGTCAAGGATGGGTCAAGATGCTGTTTTGTCTGTGGATGCAAAGAAACCTGGCAGAGTGTCGAAGACTTCTAGGAAGACAGGGATTTGCCCAGTGTCAAAAGCTGCTCATAGTAAGTTGGTTGTTCAGAGAAGGCATCGAACTGACGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGCGAATGCTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAATTCAATGTCAGCGGATCATACACTTTGAAAATCCCTTATCAATTCTCTGCAGCGTATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGACTGTTGGACTGTCAACTCTGTGCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGGTGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGCAAGGAAGGGCTTGACCATCAGAATAGGGAACCAAAATCTAATAGATTAGCTATAGTTCCATCTACCAGCGAGCACCCTTGCGTGTGA 1698 0.4205 MACRDCEATLNVRRPHFYELYSSTSSSERLKIPDGFSHYMEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWPTFLEDHTIEVGDLLVFRFEGHLSFTVLVFDQRACEKEAAFISECSQYACDLNHFNAHKRSREENCSLNFVAEGLLKKLKGSTFENQQLKTDIEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSSYPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRIVGIGRDGIDCHVGKVAFSRPLTGHSINSHRTSQYMPIKAKVNPKCNGNVDLFDKKRSRMGQDAVLSVDAKKPGRVSKTSRKTGICPVSKAAHSKLVVQRRHRTDDELSSQAKAGLRMLFALDEQRVAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAYLPSYKTEVVLRNLRGDCWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHQNREPKSNRLAIVPSTSEHPCV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0297 565 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Prci2g0297 565 SMART B3_2 212 308 IPR003340 GO:0003677
Prci2g0297 565 SMART B3_2 17 108 IPR003340 GO:0003677
Prci2g0297 565 SMART B3_2 441 539 IPR003340 GO:0003677
Prci2g0297 565 CDD B3_DNA 210 304 IPR003340 GO:0003677
Prci2g0297 565 SUPERFAMILY DNA-binding pseudobarrel domain 434 535 IPR015300 -
Prci2g0297 565 SUPERFAMILY DNA-binding pseudobarrel domain 205 306 IPR015300 -
Prci2g0297 565 CDD B3_DNA 22 106 IPR003340 GO:0003677
Prci2g0297 565 Pfam B3 DNA binding domain 216 304 IPR003340 GO:0003677
Prci2g0297 565 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Prci2g0297 565 Pfam B3 DNA binding domain 441 526 IPR003340 GO:0003677
Prci2g0297 565 ProSiteProfiles B3 DNA-binding domain profile. 441 537 IPR003340 GO:0003677
Prci2g0297 565 CDD B3_DNA 439 533 IPR003340 GO:0003677
Prci2g0297 565 ProSiteProfiles B3 DNA-binding domain profile. 212 308 IPR003340 GO:0003677
Prci2g0297 565 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Prci2g0297 565 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 306 IPR044837 -
Prci2g0297 565 Gene3D - 8 110 IPR015300 -
Prci2g0297 565 Gene3D - 194 307 IPR015300 -
Prci2g0297 565 Gene3D - 426 536 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0297 Prci-Chr2 2091607 2095531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0297 210 524 B3 DNA Binding Superfamily AT3G18990 22.121 2.83e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g0297 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0297 - - pcin:129303869 1137.09