LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g0297	ATGGCCTGCCGGGACTGTGAGGCGACCTTAAATGTGAGGAGGCCTCACTTCTACGAGCTTTATTCCTCTACATCGAGCTCCGAGAGACTGAAAATTCCGGATGGATTCAGCCATTACATGGAAGGCAGGACGTCTGGTTTAGTCTCACTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATCTTTTCCTCCATCATGGATGGCCGACATTTTTGGAAGATCACACTATAGAAGTTGGTGACCTTTTGGTTTTCAGATTTGAGGGTCATTTAAGCTTCACTGTGCTAGTTTTTGACCAAAGAGCATGTGAGAAAGAAGCAGCATTTATATCTGAATGCAGTCAATATGCATGTGACCTCAACCATTTTAATGCACATAAAAGAAGTAGGGAGGAGAACTGCTCTTTGAATTTTGTTGCTGAAGGTTTGCTGAAGAAATTGAAAGGGAGTACCTTTGAGAACCAGCAACTCAAGACGGATATAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCATAGTAGAGTCTGTCTGTCAAAATTGTCATCATACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCCTCTTACCCGTATTTTGTGAGAATCATGAAAAGCTTCAATATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGCACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACACACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATTGTTGGAATAGGAAGGGATGGTATAGACTGTCACGTTGGGAAAGTAGCTTTTAGTAGGCCTCTTACAGGGCATTCCATCAATTCCCATAGAACTTCTCAGTATATGCCAATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATTTGATAAAAAGCGGTCAAGGATGGGTCAAGATGCTGTTTTGTCTGTGGATGCAAAGAAACCTGGCAGAGTGTCGAAGACTTCTAGGAAGACAGGGATTTGCCCAGTGTCAAAAGCTGCTCATAGTAAGTTGGTTGTTCAGAGAAGGCATCGAACTGACGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGCGAATGCTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAATTCAATGTCAGCGGATCATACACTTTGAAAATCCCTTATCAATTCTCTGCAGCGTATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGACTGTTGGACTGTCAACTCTGTGCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGGTGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGCAAGGAAGGGCTTGACCATCAGAATAGGGAACCAAAATCTAATAGATTAGCTATAGTTCCATCTACCAGCGAGCACCCTTGCGTGTGA	1698	0.4205	MACRDCEATLNVRRPHFYELYSSTSSSERLKIPDGFSHYMEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWPTFLEDHTIEVGDLLVFRFEGHLSFTVLVFDQRACEKEAAFISECSQYACDLNHFNAHKRSREENCSLNFVAEGLLKKLKGSTFENQQLKTDIEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSSYPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRIVGIGRDGIDCHVGKVAFSRPLTGHSINSHRTSQYMPIKAKVNPKCNGNVDLFDKKRSRMGQDAVLSVDAKKPGRVSKTSRKTGICPVSKAAHSKLVVQRRHRTDDELSSQAKAGLRMLFALDEQRVAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAYLPSYKTEVVLRNLRGDCWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHQNREPKSNRLAIVPSTSEHPCV	565

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci2g0297	565	ProSiteProfiles	B3 DNA-binding domain profile.	15	108	IPR003340	GO:0003677
Prci2g0297	565	SMART	B3_2	212	308	IPR003340	GO:0003677
Prci2g0297	565	SMART	B3_2	17	108	IPR003340	GO:0003677
Prci2g0297	565	SMART	B3_2	441	539	IPR003340	GO:0003677
Prci2g0297	565	CDD	B3_DNA	210	304	IPR003340	GO:0003677
Prci2g0297	565	SUPERFAMILY	DNA-binding pseudobarrel domain	434	535	IPR015300	-
Prci2g0297	565	SUPERFAMILY	DNA-binding pseudobarrel domain	205	306	IPR015300	-
Prci2g0297	565	CDD	B3_DNA	22	106	IPR003340	GO:0003677
Prci2g0297	565	Pfam	B3 DNA binding domain	216	304	IPR003340	GO:0003677
Prci2g0297	565	Pfam	B3 DNA binding domain	22	107	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g0297	Prci-Chr2	2091607	2095531	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g0297	210	524	B3 DNA Binding Superfamily	AT3G18990	22.121	2.83e-07	51.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Prci2g0297		B3	1.2e-12	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g0297	-		-	pcin:129303869	1137.09

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