Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0296 ATGGCCTGCCGGGACTGTGAGGCGACCTTAAATGTGAGGAGGCCTCACTTCTACGAGCTTTATTCCTCTACATCGAGCTCCGAGAGACTGAAAATTCCGGATGGATTCAGCCATTACATGGAAGGCAGGACGTCTGGTTTAGTCTCACTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATCTTTTCCTCCATCATGGATGGCCGACATTTTTGGAAGATCACACTATAGAAGTTGGTGACCTTTTGGTTTTCAGATTTGAGGGTCATTTAAGCTTCACTGTGCTAGTTTTTGACCAAAGAGCATGTGAGAAAGAAGCAGCATTTATATCTGAATGCAGTCAATATGCATGTGACCTCAACCATTTTAATGCACATAAAAGAAGTAGGGAGGAGAACTGCTCTTTGAATTTTGTTGCTGAAGGTTTGCTGAAGAAATTGAAAGGGAGTACCTTTGAGAACCAGCAACTCAAGACGGATATAGGTAATAAAGATTTATCCTTGCTTGAGTGGGTAAAACCGATTAATATGTTCAGAGAAAAAGGAGAATCCTCCAAAGAAGATGCACAACTTAGATGCCCAACTAGTGATGTTGCTGTGCCTTCTCAAATGGAATATAACAACGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCATAGTAGAGTCTGTCTGTCAAAATTGTCATCATACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCCTCTTACCCGTATTTTGTGAGAATCATGAAAAGCTTCAATATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGCACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACACACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATTGTTGGAATAGGAAGGGATGGTATAGACTGTCACGTTGGGAAAGTAGCTTTTAGTAGGCCTCTTACAGGGCATTCCATCAATTCCCATAGAACTTCTCAGTATATGCCAATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATTTGATAAAAAGCGGTCAAGGATGGGTCAAGATGCTGTTTTGTCTGTGGATGCAAAGAAACCTGGCAGAGTGTCGAAGACTTCTAGGAAGACAGGGATTTGCCCAGTGTCAAAAGCTGCTCATATTGTTCAGAGAAGGCATCGAACTGACGATGAGCTAAGCTCACAGGCTAAAGCTGGTTTGCGAATGCTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAATTCAATGTCAGCGGATCATACACTTTGAAAATCCCTTATCAATTCTCTGCAGCGTATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGACTGTTGGACTGTCAACTCTGTGCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGGTGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGCAAGGAAGGGCTTGACCATCAGAATAGGGAACCAAAATCTAATAGATTAGCTATAGTTCCATCTACCAGCGAGCACCCTTGCGTGTGA 1839 0.4165 MACRDCEATLNVRRPHFYELYSSTSSSERLKIPDGFSHYMEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWPTFLEDHTIEVGDLLVFRFEGHLSFTVLVFDQRACEKEAAFISECSQYACDLNHFNAHKRSREENCSLNFVAEGLLKKLKGSTFENQQLKTDIGNKDLSLLEWVKPINMFREKGESSKEDAQLRCPTSDVAVPSQMEYNNECEEAAMQIGSGKEDDQYMHSRVCLSKLSSYDEKRVAQLFTSSYPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRIVGIGRDGIDCHVGKVAFSRPLTGHSINSHRTSQYMPIKAKVNPKCNGNVDLFDKKRSRMGQDAVLSVDAKKPGRVSKTSRKTGICPVSKAAHIVQRRHRTDDELSSQAKAGLRMLFALDEQRVAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAYLPSYKTEVVLRNLRGDCWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHQNREPKSNRLAIVPSTSEHPCV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0296 612 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Prci2g0296 612 SMART B3_2 488 586 IPR003340 GO:0003677
Prci2g0296 612 SMART B3_2 17 108 IPR003340 GO:0003677
Prci2g0296 612 SMART B3_2 262 358 IPR003340 GO:0003677
Prci2g0296 612 CDD B3_DNA 22 106 IPR003340 GO:0003677
Prci2g0296 612 Gene3D - 473 583 IPR015300 -
Prci2g0296 612 Gene3D - 244 357 IPR015300 -
Prci2g0296 612 Gene3D - 8 110 IPR015300 -
Prci2g0296 612 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Prci2g0296 612 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Prci2g0296 612 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Prci2g0296 612 Pfam B3 DNA binding domain 488 573 IPR003340 GO:0003677
Prci2g0296 612 CDD B3_DNA 260 354 IPR003340 GO:0003677
Prci2g0296 612 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Prci2g0296 612 ProSiteProfiles B3 DNA-binding domain profile. 488 584 IPR003340 GO:0003677
Prci2g0296 612 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Prci2g0296 612 CDD B3_DNA 486 580 IPR003340 GO:0003677
Prci2g0296 612 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 22 356 IPR044837 -
Prci2g0296 612 SUPERFAMILY DNA-binding pseudobarrel domain 481 582 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0296 Prci-Chr2 2091607 2095539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0296 260 571 B3 DNA Binding Superfamily AT3G18990 21.341 5.83e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci2g0296 B3 1.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0296 - - pcin:129303869 1252.65